Cornelia de Lange syndrome
General Information (adopted from Orphanet):
Synonyms, Signs: |
Brachmann-de Lange syndrome |
Number of Symptoms | 144 |
OrphanetNr: | 199 |
OMIM Id: |
122470
300590 300882 610759 614701 |
ICD-10: |
Q87.1 |
UMLs: |
C0270972 |
MeSH: |
D003635 |
MedDRA: |
10056354 |
Snomed: |
40354009 |
Prevalence, inheritance and age of onset:
Prevalence: | 1 of 100 000 [Orphanet] |
Inheritance: |
Autosomal dominant X-linked recessive [Orphanet] |
Age of onset: |
Antenatal Neonatal [Orphanet] |
Disease classification (adopted from Orphanet):
Parent Diseases: |
Eyebrow hypertrophy
-Rare eye disease -Rare genetic disease Genetic malformation syndrome with short stature -Rare genetic disease Malformation syndrome with short stature -Rare developmental defect during embryogenesis Multiple congenital anomalies/dysmorphic syndrome-intellectual deficit -Rare developmental defect during embryogenesis -Rare genetic disease Ptosis -Rare eye disease -Rare genetic disease Rare genetic intellectual deficit with developmental anomaly -Rare genetic disease Rare intellectual deficit with developmental anomaly -Rare neurologic disease Syndrome associated with Pierre Robin syndrome -Rare developmental defect during embryogenesis -Rare genetic disease -Rare maxillo-facial surgical disease -Rare otorhinolaryngologic disease Syndrome with a symptomatic strabismus -Rare eye disease -Rare genetic disease Syndrome with limb reduction defects -Rare bone disease -Rare developmental defect during embryogenesis Syndromic diaphragmatic or abdominal wall malformation -Rare abdominal surgical disease -Rare developmental defect during embryogenesis Syndromic diaphragmatic or thoracic malformation -Rare surgical thoracic disease |
Symptom Information:
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(HPO:0000086) | Ectopic kidney | 29 / 7739 | ||||
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(HPO:0000028) | Cryptorchidism | 347 / 7739 | ||||
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(HPO:0005565) | Reduced renal corticomedullary differentiation | 5 / 7739 | ||||
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(HPO:0000093) | Proteinuria | Rare [HPO:probinson] | 169 / 7739 | |||
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(HPO:0000035) | Abnormality of the testis | Frequent [Orphanet] | 296 / 7739 | |||
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(HPO:0000083) | Renal insufficiency | Occasional [Orphanet] | 232 / 7739 | |||
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(HPO:0000089) | Renal hypoplasia | Rare [HPO:probinson] | 78 / 7739 | |||
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(HPO:0000047) | Hypospadias | Frequent [Orphanet] | 250 / 7739 | |||
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(HPO:0000076) | Vesicoureteral reflux | Frequent [Orphanet] Rare [HPO:probinson] | 94 / 7739 | |||
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(HPO:0000054) | Micropenis | Frequent [Orphanet] | 257 / 7739 | |||
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(HPO:0000050) | Hypoplastic male external genitalia | 10 / 7739 | ||||
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(HPO:0000786) | Primary amenorrhea | Occasional [Orphanet] | 61 / 7739 | |||
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(HPO:0000107) | Renal cyst | Frequent [Orphanet] Rare [HPO:probinson] | 126 / 7739 | |||
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(HPO:0000059) | Hypoplastic labia majora | 22 / 7739 | ||||
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(HPO:0000130) | Abnormality of the uterus | Occasional [Orphanet] | 86 / 7739 | |||
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(HPO:0000164) | Abnormality of the teeth | Very frequent [Orphanet] | 291 / 7739 | |||
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(HPO:0000687) | Widely spaced teeth | 40 / 7739 | ||||
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(HPO:0002162) | Low posterior hairline | Very frequent [Orphanet] | 88 / 7739 | |||
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(HPO:0009804) | Reduced number of teeth | Frequent [Orphanet] | 137 / 7739 | |||
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(HPO:0000664) | Synophrys | Very frequent [Orphanet] | 112 / 7739 | |||
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(HPO:0000233) | Thin vermilion border | Very frequent [Orphanet] | 124 / 7739 | |||
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(HPO:0000343) | Long philtrum | Very frequent [Orphanet] | 262 / 7739 | |||
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(HPO:0000499) | Abnormality of the eyelashes | Very frequent [Orphanet] | 35 / 7739 | |||
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(HPO:0000470) | Short neck | Very frequent [Orphanet] | 345 / 7739 | |||
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(HPO:0000294) | Low anterior hairline | Very frequent [Orphanet] | 52 / 7739 | |||
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(HPO:0000204) | Cleft upper lip | 193 / 7739 | ||||
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(HPO:0000684) | Delayed eruption of teeth | Very frequent [Orphanet] | 117 / 7739 | |||
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(HPO:0000252) | Microcephaly | Very frequent [Orphanet] | 832 / 7739 | |||
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(HPO:0000527) | Long eyelashes | 46 / 7739 | ||||
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(HPO:0000248) | Brachycephaly | Very frequent [Orphanet] | 222 / 7739 | |||
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(HPO:0000218) | High palate | 356 / 7739 | ||||
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(HPO:0007665) | Curly eyelashes | 6 / 7739 | ||||
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(HPO:0000219) | Thin upper lip vermilion | 112 / 7739 | ||||
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(HPO:0000174) | Abnormality of the palate | Occasional [Orphanet] | 298 / 7739 | |||
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(HPO:0000498) | Blepharitis | Frequent [Orphanet] | 27 / 7739 | |||
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(HPO:0000347) | Micrognathia | 426 / 7739 | ||||
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(HPO:0003196) | Short nose | Very frequent [Orphanet] | 264 / 7739 | |||
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(HPO:0000175) | Cleft palate | 349 / 7739 | ||||
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(HPO:0002553) | Highly arched eyebrow | Very frequent [Orphanet] | 92 / 7739 | |||
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(HPO:0000520) | Proptosis | 192 / 7739 | ||||
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(HPO:0002714) | Downturned corners of mouth | Very frequent [Orphanet] | 98 / 7739 | |||
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(HPO:0005280) | Depressed nasal bridge | Very frequent [Orphanet] | 381 / 7739 | |||
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(HPO:0000453) | Choanal atresia | Occasional [Orphanet] | 76 / 7739 | |||
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(HPO:0002705) | High, narrow palate | Very frequent [Orphanet] | 308 / 7739 | |||
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(HPO:0000463) | Anteverted nares | Very frequent [Orphanet] | 305 / 7739 | |||
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(HPO:0000277) | Abnormality of the mandible | Very frequent [Orphanet] | 394 / 7739 | |||
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(HPO:0000574) | Thick eyebrow | Very frequent [Orphanet] | 96 / 7739 | |||
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(HPO:0000482) | Microcornea | Frequent [Orphanet] | 102 / 7739 | |||
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(HPO:0000545) | Myopia | Frequent [Orphanet] | 286 / 7739 | |||
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(HPO:0000486) | Strabismus | Occasional [Orphanet] | 576 / 7739 | |||
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(HPO:0000518) | Cataract | Occasional [Orphanet] | 454 / 7739 | |||
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(HPO:0000639) | Nystagmus | Occasional [Orphanet] | 555 / 7739 | |||
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(HPO:0000648) | Optic atrophy | 238 / 7739 | ||||
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(HPO:0000508) | Ptosis | Frequent [Orphanet] | 459 / 7739 | |||
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(HPO:0000501) | Glaucoma | Occasional [Orphanet] | 180 / 7739 | |||
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(HPO:0000588) | Optic nerve coloboma | 27 / 7739 | ||||
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(HPO:0000483) | Astigmatism | 67 / 7739 | ||||
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(HPO:0000357) | Abnormal location of ears | Frequent [Orphanet] | 328 / 7739 | |||
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(HPO:0000372) | Abnormality of the auditory canal | Very frequent [Orphanet] | 49 / 7739 | |||
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(HPO:0000369) | Low-set ears | 372 / 7739 | ||||
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(HPO:0000405) | Conductive hearing impairment | Frequent [Orphanet] | 164 / 7739 | |||
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(HPO:0000407) | Sensorineural hearing impairment | Frequent [Orphanet] | 524 / 7739 | |||
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(HPO:0000717) | Autism | Occasional [Orphanet] | 108 / 7739 | |||
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(HPO:0000752) | Hyperactivity | Frequent [Orphanet] | 140 / 7739 | |||
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(HPO:0001249) | Intellectual disability | 1089 / 7739 | ||||
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(HPO:0100716) | Self-injurious behavior | 43 / 7739 | ||||
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(HPO:0000750) | Delayed speech and language development | 197 / 7739 | ||||
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(HPO:0000708) | Behavioral abnormality | 212 / 7739 | ||||
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(HPO:0000722) | Obsessive-compulsive behavior | Frequent [Orphanet] | 35 / 7739 | |||
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(HPO:0001276) | Hypertonia | Very frequent [Orphanet] | 317 / 7739 | |||
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(HPO:0001250) | Seizures | Occasional [Orphanet] | 1245 / 7739 | |||
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(HPO:0009830) | Peripheral neuropathy | Occasional [Orphanet] | 206 / 7739 | |||
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(HPO:0100851) | Abnormal emotion/affect behavior | Frequent [Orphanet] | 85 / 7739 | |||
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(HPO:0002360) | Sleep disturbance | Frequent [Orphanet] | 113 / 7739 | |||
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(HPO:0002167) | Neurological speech impairment | Frequent [Orphanet] | 308 / 7739 | |||
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(HPO:0006709) | Aplasia/Hypoplasia of the nipples | Frequent [Orphanet] | 28 / 7739 | |||
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(HPO:0002557) | Hypoplastic nipples | 33 / 7739 | ||||
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(HPO:0008373) | Puberty and gonadal disorders | Occasional [Orphanet] | 156 / 7739 | |||
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(HPO:0002987) | Elbow flexion contracture | 64 / 7739 | ||||
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(HPO:0002983) | Micromelia | Very frequent [Orphanet] | 130 / 7739 | |||
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(HPO:0003997) | Hypoplastic radial head | 2 / 7739 | ||||
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(HPO:0005815) | Supernumerary ribs | 9 / 7739 | ||||
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(HPO:0000954) | Single transverse palmar crease | Frequent [Orphanet] | 162 / 7739 | |||
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(HPO:0001385) | Hip dysplasia | Occasional [Orphanet] | 242 / 7739 | |||
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(HPO:0003083) | Dislocated radial head | 35 / 7739 | ||||
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(HPO:0004691) | 2-3 toe syndactyly | 50 / 7739 | ||||
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(HPO:0009623) | Proximal placement of thumb | Very frequent [Orphanet] | 50 / 7739 | |||
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(HPO:0001770) | Toe syndactyly | Very frequent [Orphanet] | 149 / 7739 | |||
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(HPO:0009829) | Phocomelia | 20 / 7739 | ||||
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(HPO:0001180) | Hand oligodactyly | 17 / 7739 | ||||
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(HPO:0002997) | Abnormality of the ulna | Occasional [Orphanet] | 75 / 7739 | |||
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(HPO:0006494) | Aplasia/Hypoplasia involving bones of the feet | Very frequent [Orphanet] | 69 / 7739 | |||
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(HPO:0200055) | Small hand | Very frequent [Orphanet] | 71 / 7739 | |||
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(HPO:0001387) | Joint stiffness | Frequent [Orphanet] | 322 / 7739 | |||
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(HPO:0000767) | Pectus excavatum | Occasional [Orphanet] | 244 / 7739 | |||
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(HPO:0002974) | Radioulnar synostosis | Frequent [Orphanet] | 52 / 7739 | |||
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(HPO:0002984) | Hypoplasia of the radius | 44 / 7739 | ||||
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(HPO:0001377) | Limited elbow extension | 38 / 7739 | ||||
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(HPO:0001762) | Talipes equinovarus | Occasional [Orphanet] | 309 / 7739 | |||
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(HPO:0009380) | Aplasia of the fingers | Occasional [Orphanet] | 51 / 7739 | |||
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(HPO:0001163) | Abnormality of the metacarpal bones | Very frequent [Orphanet] | 149 / 7739 | |||
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(HPO:0003042) | Elbow dislocation | Frequent [Orphanet] | 89 / 7739 | |||
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(HPO:0002750) | Delayed skeletal maturation | Very frequent [Orphanet] | 250 / 7739 | |||
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(HPO:0000879) | Short sternum | 16 / 7739 | ||||
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(HPO:0004209) | Clinodactyly of the 5th finger | Frequent [Orphanet] | 288 / 7739 | |||
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(HPO:0010880) | Increased nuchal translucency | Occasional [Orphanet] | 13 / 7739 | |||
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(HPO:0001557) | Prenatal movement abnormality | Occasional [Orphanet] | 16 / 7739 | |||
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(HPO:0001622) | Premature birth | Frequent [Orphanet] | 100 / 7739 | |||
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(HPO:0001551) | Abnormality of the umbilicus | 4 / 7739 | ||||
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(HPO:0002580) | Volvulus | Occasional [Orphanet] | 10 / 7739 | |||
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(HPO:0002021) | Pyloric stenosis | Occasional [Orphanet] | 51 / 7739 | |||
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(HPO:0000776) | Congenital diaphragmatic hernia | 36 / 7739 | ||||
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(HPO:0002020) | Gastroesophageal reflux | 101 / 7739 | ||||
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(HPO:0004785) | Malrotation of colon | 3 / 7739 | ||||
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(HPO:0002577) | Abnormality of the stomach | Very frequent [Orphanet] | 84 / 7739 | |||
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(HPO:0002566) | Intestinal malrotation | Occasional [Orphanet] | 89 / 7739 | |||
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(HPO:0000775) | Abnormality of the diaphragm | Occasional [Orphanet] | 62 / 7739 | |||
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(HPO:0002036) | Hiatus hernia | 24 / 7739 | ||||
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(HPO:0005217) | Duplication of internal organs | 3 / 7739 | ||||
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(HPO:0000023) | Inguinal hernia | 181 / 7739 | ||||
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(HPO:0001511) | Intrauterine growth retardation | Frequent [Orphanet] | 358 / 7739 | |||
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(HPO:0004325) | Decreased body weight | Frequent [Orphanet] | 492 / 7739 | |||
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(HPO:0001956) | Truncal obesity | Occasional [Orphanet] | 39 / 7739 | |||
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(HPO:0004322) | Short stature | Very frequent [Orphanet] | 1232 / 7739 | |||
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(HPO:0011362) | Abnormal hair quantity | Very frequent [Orphanet] | 92 / 7739 | |||
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(HPO:0000965) | Cutis marmorata | Frequent [Orphanet] | 46 / 7739 | |||
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(HPO:0001007) | Hirsutism | 91 / 7739 | ||||
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(HPO:0001629) | Ventricular septal defect | Occasional [Orphanet] | 316 / 7739 | |||
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(HPO:0030680) | Abnormality of cardiovascular system morphology | Occasional [Orphanet] | 355 / 7739 | |||
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(HPO:0001631) | Atria septal defect | Occasional [Orphanet] | 274 / 7739 | |||
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(HPO:0001873) | Thrombocytopenia | 224 / 7739 | ||||
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(HPO:0001612) | Weak cry | 17 / 7739 | ||||
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(HPO:0001608) | Abnormality of the voice | Very frequent [Orphanet] | 126 / 7739 | |||
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(HPO:0002090) | Pneumonia | 59 / 7739 | ||||
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(HPO:0001252) | Muscular hypotonia | Occasional [Orphanet] | 990 / 7739 | |||
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(HPO:0003745) | Sporadic | 131 / 7739 | ||||
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(HPO:0002120) | Cerebral cortical atrophy | Occasional [Orphanet] | 187 / 7739 | |||
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(HPO:0002334) | Abnormality of the cerebellar vermis | Occasional [Orphanet] | 137 / 7739 | |||
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(HPO:0400004) | Long ear | Occasional [Orphanet] | 94 / 7739 | |||
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(HPO:0002119) | Ventriculomegaly | Occasional [Orphanet] | 253 / 7739 | |||
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(HPO:0012815) | Hypoplastic female external genitalia | Frequent [Orphanet] | 36 / 7739 | |||
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(HPO:0003812) | Phenotypic variability | 129 / 7739 | ||||
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(HPO:0000006) | Autosomal dominant inheritance | 2518 / 7739 | ||||
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(HPO:0012758) | Neurodevelopmental delay | Very frequent [Orphanet] | 949 / 7739 |
Associated genes:
ClinVar (via SNiPA)
Gene symbol | Variation | Clinical significance | Reference |
---|
Additional Information:
Diagnosis GeneReviews | Diagnosis of Cornelia de Lange syndrome (CdLS) is made on a clinical basis. The most important clinical signs of CdLS are the following [Kline et al 2007a]: ... Gene 1Proportion of CdLS Attributed to Mutations in This GeneTest MethodMutations Detected 2Test AvailabilityNIPBL~60% 3Sequence analysis / mutation scanning | Sequence variants 4Clinical Deletion / duplication analysis 5Partial or whole-gene deletions 6SMC1A~5% 7Sequence analysis / mutation scanningSequence variants 4Clinical Deletion / duplication analysis 5Exonic or whole-gene deletions / duplications 8 SMC3<1% 9Sequence analysis Sequence variants 4Clinical1. See Table A. Genes and Databases for chromosome locus and protein name.2. See Molecular Genetics for information on allelic variants. 3. In three studies of 179 individuals with CdLS, mutation scanning identified NIPBL frameshift, nonsense, splice-site, and missense mutations in approximately 60% of individuals [Borck et al 2004, Gillis et al 2004, Tonkin et al 2004, Bhuiyan et al 2006, Musio et al 2006, Yan et al 2006, Selicorni et al 2007]. 4. Examples of mutations detected by sequence analysis may include small intragenic deletions/insertions and missense, nonsense, and splice site mutations; typically, exonic or whole gene deletions/duplications are not detected. For issues to consider in interpretation of sequence analysis results, click here.5. Testing that identifies deletions/duplications not readily detectable by sequence analysis of the coding and flanking intronic regions of genomic DNA; included in the variety of methods that may be used are: quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), and chromosomal microarray (CMA) that includes this gene/chromosome segment.6. About 1% of NIPBL-related CdLS [Bhuiyan et al 2007, unpublished observations].7. Sequence analysis identified a SMC1A mutation in approximately 5% of probands, particularly those with milder features [Musio et al 2006, Borck et al 2007, Deardorff et al 2007].8. None reported to date 9. Sequence analysis identified a SMC3 mutation in one proband with milder features [Deardorff et al 2007].Interpretation of test results Given the current 60% mutation detection rate of NIPBL mutations, failure to identify a mutation would not preclude the diagnosis of CdLS, particularly in a mild case, where mutation detection rates are closer to 30%. Testing StrategyTo confirm the diagnosis of CdLS in classic cases and to establish the diagnosis in an atypical case, molecular genetic testing of NIPBL:Perform sequence analysis or mutation scanning first. If no mutation is identified, perform deletion/duplication analysis. If no NIPBL mutation is identified and the patient has milder physical features of CdLS, consider SMC1A sequence analysis or mutation scanning.If no NIPBL or SMC1A mutation is identified and CdLS is highly suspected especially in a patient with milder features, consider SMC3 sequence analysis.When the diagnosis of CdLS is not clear or molecular genetic testing does not identify a mutation, consider cytogenetic testing or array-based testing (i.e., chromosome microarray analysis or array genomic hybridization) because a few individuals with deletions of 5p13 that include the NIPBL locus have been reported [Taylor & Josifek 1981, Hulinsky et al 2005, Hayashi et al 2007]. In addition, this testing may be helpful in evaluating for other possible etiologies, as the clinical findings in several chromosomal abnormalities overlap with those of CdLS [DeScipio et al 2005, Rohatgi et al 2010]. Prenatal diagnosis and preimplantation genetic diagnosis (PGD) for at-risk pregnancies require prior identification of the disease-causing mutation in the family.Genetically Related (Allelic) DisordersNo other phenotypes are known to be associated with mutations in NIPBL, SMC1A, or SMC3.
Clinical Description GeneReviews | Although CdLS was formally characterized over 70 years ago and well delineated clinically [Ptacek et al 1963, Motl & Opitz 1971, Jackson et al 1993], the natural history of CdLS has only been studied recently [Kline et al 2007a]. ... |
Genotype-Phenotype Correlations GeneReviews | Whereas individuals with classic findings of CdLS, including characteristic facial features and limb anomalies, are likely to have a mutation in NIPBL, NIPBL mutations have been found in individuals with both mild and severe phenotypes. NIPBL mutations are evenly distributed throughout the coding sequence. Individuals with missense NIBPL mutations typically have milder disease. ... |
Differential Diagnosis GeneReviews | Several conditions demonstrate overlap of clinical features with CdLS:... |
Management GeneReviews |
The following recommendations for evaluation of individuals diagnosed with Cornelia de Lange syndrome (CdLS) are based on recent guidelines [Kline et al 2007b (click ![]() |
Molecular genetics GeneReviews |
Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.... Gene SymbolChromosomal LocusProtein NameLocus SpecificHGMDNIPBL5p13 | Nipped-B-like proteinCatalogue of Somatic Mutations in Cancer (COSMIC)