Argininemia
General Information (adopted from Orphanet):
Synonyms, Signs: |
Arginase deficiency Hyperargininemia ARG1 deficiency |
Number of Symptoms | 74 |
OrphanetNr: | 90 |
OMIM Id: |
207800
|
ICD-10: |
E72.2 |
UMLs: |
C0268548 |
MeSH: |
D020162 |
MedDRA: |
10062695 |
Snomed: |
23501004 |
Prevalence, inheritance and age of onset:
Prevalence: | < 0.1 of 100 000 - PMID: 20142522 [IBIS] |
Inheritance: |
Autosomal recessive - PMID: 22964440 [IBIS] |
Age of onset: |
Infancy Childhood - PMID: 15694174; 27106216 [IBIS] |
Disease classification (adopted from Orphanet):
Parent Diseases: |
Disorder of urea cycle metabolism and ammonia detoxification
-Rare genetic disease |
Comment:
Argininemia belongs to the class of urea cycle disorders and is caused by deficiency of the enzyme arginase (ARG1), one of the six enzymes and two transporters involved in the detoxification of ammonium to urea. First symptoms, often neurologically based, typically present in children between 2 and 4 years of age (PMID:15694174). Argininemia is often misdiagnosed as cerebral palsy (PMID:26123990). |
Symptom Information:
|
(HPO:0003268) | Argininuria | 22633632 | IBIS | 5 / 7739 | ||
|
(HPO:0002039) | Anorexia | 15694174 | IBIS | 62 / 7739 | ||
|
(HPO:0011968) | Feeding difficulties | 15694174 | IBIS | 240 / 7739 | ||
|
(HPO:0002018) | Nausea | 15694174 | IBIS | 44 / 7739 | ||
|
(HPO:0002013) | Vomiting | Frequent [IBIS] | 83% (n=24) | 15694174 | IBIS | 191 / 7739 |
|
(HPO:0002038) | Protein avoidance | Frequent [IBIS] | 40% (n=25) | 15694174 | IBIS | 7 / 7739 |
|
(HPO:0003218) | Oroticaciduria | Frequent [IBIS] | 15694174 | IBIS | 10 / 7739 | |
|
(HPO:0004337) | Abnormality of amino acid metabolism | Very frequent [IBIS] Very frequent [Orphanet] | 15694174 | IBIS | 45 / 7739 | |
|
(HPO:0011966) | Elevated plasma citrulline | 24224027 | IBIS | 5 / 7739 | ||
|
(HPO:0010909) | Abnormality of arginine metabolism | Very frequent [IBIS] | 100% (n=27) | 15694174 | IBIS | 3 / 7739 |
|
(HPO:0003355) | Aminoaciduria | Frequent [IBIS] Very frequent [Orphanet] | 10771848 | IBIS | 65 / 7739 | |
|
(HPO:0008339) | Diaminoaciduria | Frequent [IBIS] | 14605507 | IBIS | 1 / 7739 | |
|
(MedDRA:10062695) | Arginase deficiency | Very frequent [IBIS] | 15694174 | IBIS | 1 / 7739 | |
|
(HPO:0001928) | Abnormality of coagulation | 15694174 | IBIS | 44 / 7739 | ||
|
(HPO:0002181) | Cerebral edema | 15694174 | IBIS | 19 / 7739 | ||
|
(HPO:0001987) | Hyperammonemia | Frequent [Orphanet] Frequent [IBIS] | 88% (n=26) | 15694174 | IBIS | 50 / 7739 |
|
(HPO:0002359) | Frequent falls | 15694174 | IBIS | 24 / 7739 | ||
|
(HPO:0002169) | Clonus | 15694174 | IBIS | 37 / 7739 | ||
|
(HPO:0002921) | Abnormality of the cerebrospinal fluid | 19052914 | IBIS | 6 / 7739 | ||
|
(HPO:0001291) | Abnormality of the cranial nerves | 15694174 | IBIS | 27 / 7739 | ||
|
(HPO:0001298) | Encephalopathy | Occasional [IBIS] | 22633632 | IBIS | 72 / 7739 | |
|
(HPO:0009830) | Peripheral neuropathy | 22964440 | IBIS | 206 / 7739 | ||
|
(HPO:0001251) | Ataxia | 15694174 | IBIS | 413 / 7739 | ||
|
(HPO:0002311) | Incoordination | 15694174 | IBIS | 84 / 7739 | ||
|
(HPO:0002312) | Clumsiness | 15694174 | IBIS | 28 / 7739 | ||
|
(HPO:0001347) | Hyperreflexia | 15694174 | IBIS | 363 / 7739 | ||
|
(HPO:0001276) | Hypertonia | 15694174 | IBIS | 317 / 7739 | ||
|
(HPO:0001257) | Spasticity | 15694174 | IBIS | 251 / 7739 | ||
|
(HPO:0002061) | Lower limb spasticity | 15694174 | IBIS | 56 / 7739 | ||
|
(HPO:0001258) | Spastic paraplegia | Frequent [IBIS] | 22964440 | IBIS | 97 / 7739 | |
|
(HPO:0002478) | Progressive spastic quadriplegia | Occasional [IBIS] | 9% (n=23) | 15694174 | IBIS | 7 / 7739 |
|
(HPO:0001264) | Spastic diplegia | Very frequent [IBIS] | 91% (n=23) | 15694174 | IBIS | 24 / 7739 |
|
(HPO:0001269) | Hemiparesis | Frequent [IBIS] Frequent [Orphanet] typical [HPO] | 15694174 | IBIS | 51 / 7739 | |
|
(HPO:0001332) | Dystonia | 22964440 | IBIS | 197 / 7739 | ||
|
(HPO:0000708) | Behavioral abnormality | Frequent [IBIS] Very frequent [Orphanet] | 15694174 | IBIS | 212 / 7739 | |
|
(HPO:0001289) | Confusion | 15694174 | IBIS | 36 / 7739 | ||
|
(HPO:0007064) | Progressive language deterioration | 15694174 | IBIS | 3 / 7739 | ||
|
(HPO:0007307) | Rapid neurologic deterioration | Occasional [IBIS] | 22% (n=27) | 9378897 | IBIS | 3 / 7739 |
|
(HPO:0001263) | Global developmental delay | Very frequent [IBIS] Very frequent [Orphanet] | 96% (n=25) | 15694174 | IBIS | 853 / 7739 |
|
(HPO:0001249) | Intellectual disability | Frequent [IBIS] Very frequent [Orphanet] | 15694174 | IBIS | 1089 / 7739 | |
|
(HPO:0001270) | Motor delay | Very frequent [Orphanet] Frequent [IBIS] | 85% (n=23) | 15694174 | IBIS | 322 / 7739 |
|
(HPO:0000716) | Depression | 15694174 | IBIS | 99 / 7739 | ||
|
(HPO:0000737) | Irritability | 15694174 | IBIS | 93 / 7739 | ||
|
(HPO:0001254) | Lethargy | 15694174 | IBIS | 104 / 7739 | ||
|
(HPO:0001259) | Coma | 15694174 | IBIS | 65 / 7739 | ||
|
(HPO:0000709) | Psychosis | Occasional [IBIS] | 15694174 | IBIS | 61 / 7739 | |
|
(HPO:0001262) | Somnolence | 15694174 | IBIS | 20 / 7739 | ||
|
(HPO:0100543) | Cognitive impairment | Frequent [IBIS] Very frequent [Orphanet] | 15694174 | IBIS | 230 / 7739 | |
|
(HPO:0002167) | Neurological speech impairment | Frequent [IBIS] Very frequent [Orphanet] | 15694174 | IBIS | 308 / 7739 | |
|
(HPO:0001288) | Gait disturbance | 15694174 | IBIS | 318 / 7739 | ||
|
(HPO:0000752) | Hyperactivity | 839367 | IBIS | 140 / 7739 | ||
|
(HPO:0002353) | EEG abnormality | Frequent [Orphanet] Very frequent [IBIS] | 95% (n=21) | 15694174 | IBIS | 188 / 7739 |
|
(HPO:0001250) | Seizures | Frequent [Orphanet] Frequent [IBIS] | 62% (n=26) | 15694174 | IBIS | 1245 / 7739 |
|
(HPO:0011097) | Epileptic spasms | Frequent [IBIS] Frequent [Orphanet] | 22964440 | IBIS | 45 / 7739 | |
|
(HPO:0002133) | Status epilepticus | Frequent [Orphanet] | 24258525 | IBIS | 59 / 7739 | |
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(HPO:0003259) | Elevated serum creatinine | 15694174 | IBIS | 31 / 7739 | ||
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(HPO:0006466) | Ankle contracture | 15694174 | IBIS | 17 / 7739 | ||
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(HPO:0001771) | Achilles tendon contracture | 15694174 | IBIS | 27 / 7739 | ||
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(HPO:0006380) | Knee flexion contracture | 15694174 | IBIS | 56 / 7739 | ||
|
(HPO:0000252) | Microcephaly | Frequent [IBIS] | 41% (n=17) | 9378897 | IBIS | 832 / 7739 |
|
(HPO:0004386) | Gastrointestinal inflammation | 15694174 | IBIS | 5 / 7739 | ||
|
(HPO:0001402) | Hepatocellular carcinoma | 22964440 | IBIS | 25 / 7739 | ||
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(HPO:0006579) | Prolonged neonatal jaundice | Occasional [IBIS] | 22964440 | IBIS | 25 / 7739 | |
|
(HPO:0001394) | Cirrhosis | 9106111 | IBIS | 102 / 7739 | ||
|
(HPO:0001395) | Hepatic fibrosis | Occasional [IBIS] | 15694174 | IBIS | 67 / 7739 | |
|
(HPO:0002240) | Hepatomegaly | Occasional [IBIS] | 15694174 | IBIS | 467 / 7739 | |
|
(HPO:0002104) | Apnea | 12640389 | IBIS | 106 / 7739 | ||
|
(HPO:0001510) | Growth delay | Frequent [IBIS] | 81% (n=21) | 15694174 | IBIS | 295 / 7739 |
|
(HPO:0008897) | Postnatal growth retardation | Frequent [IBIS] | 15694174 | IBIS | 113 / 7739 | |
|
(HPO:0002059) | Cerebral atrophy | Frequent [IBIS] | 55% (n=11) | 15694174 | IBIS | 171 / 7739 |
|
(HPO:0030051) | Tip-toe gait | 22964440 | IBIS | 10 / 7739 | ||
|
(MedDRA:10006126) | Brain herniation | 15694174 | IBIS | 1 / 7739 | ||
|
(OMIM) | Hyperarginemia | Very frequent [IBIS] | 100% (n=27) | 22633632 | IBIS | 3 / 7739 |
|
(OMIM) | Protein intolerance | 3104676 | IBIS | 2 / 7739 |
Associated genes:
ARG1; |
ClinVar (via SNiPA)
Gene symbol | Variation | Clinical significance | Reference |
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Additional Information:
Description: (OMIM) |
Arginase deficiency is an autosomal recessive inborn error of metabolism caused by a defect in the final step in the urea cycle, the hydrolysis of arginine to urea and ornithine. Urea cycle disorders are characterized by ... |
Clinical Description OMIM |
Terheggen et al. (1969, 1970) described 2 sisters, aged 18 months and 5 years, with spastic paraplegia, epileptic seizures, and severe mental retardation. The parents were related. Arginine levels were high in the blood and spinal fluid of ... |
Molecular genetics OMIM |
In a study of 20 persons homozygous or heterozygous for arginase deficiency, Grody et al. (1989) found no substantial structural ARG1 gene deletions or other rearrangements by Southern blot analysis. In a Japanese girl with argininemia, ... |
Population genetics OMIM | The prevalence of argininemia is estimated to be 1 in 1,100,000 (Testai and Gorelick, 2010). |
Diagnosis GeneReviews | Clinical findings are not specific, but the disorder may be suspected in instances of progressive loss of developmental milestones and spasticity. ... Gene SymbolTest MethodMutations DetectedMutation Detection Frequency by Test Method 1Test AvailabilityARG1Sequence analysis | Sequence variants 2UnknownClinicalDeletion / duplication analysis 3Exonic or whole-gene deletions1. The ability of the test method used to detect a mutation that is present in the indicated gene2. Mutations detected by sequence analysis may include small intragenic deletions/insertions and missense, nonsense, and splice-site mutations; typically, exonic or whole-gene deletions/duplications are not detected.3. Testing that identifies deletions/duplications not readily detectable by sequence analysis of the coding and flanking intronic regions of genomic DNA; a variety of methods including quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), or targeted chromosomal microarray analysis (gene/segment-specific) may be used. A full chromosomal microarray analysis that detects deletions/duplications across the genome may also include this gene/segment. Interpretation of test results. For issues to consider in interpretation of sequence analysis results, click here.Information on specific allelic variants may be available in Molecular Genetics (see Table A. Genes and Databases and/or Pathologic allelic variants).Testing StrategyTo confirm/establish the diagnosis in a probandPlasma arginine elevation is the primary means of ascertainment. Until recently, red blood cell enzyme testing was the gold standard for diagnostic confirmation. Molecular genetic testing (sequence analysis followed by deletion/duplication analysis if two mutations are not identified) is now readily available and is an alternative to enzyme testing as the first-line confirmatory test. Enzyme assay remains the norm if two mutations are not found. The degree of enzyme deficiency in red blood cells or the genotype cannot be used to establish disease severity or prognosis as they are but two of several factors involved in the outcome.Carrier testing for at-risk relatives using molecular genetic testing requires prior identification of the disease-causing ARG1 mutations in the family. Note: Carriers are heterozygotes for an autosomal recessive disorder and are not at risk of developing the disorder.Prenatal diagnosis and preimplantation genetic diagnosis (PGD) for at-risk pregnancies using molecular genetic testing require prior identification of the disease-causing mutations in the family.Genetically Related (Allelic) DisordersNo other phenotypes are known to be associated with mutations in ARG1.
Clinical Description GeneReviews | Unlike any of the other eight primary urea cycle disorders (see Urea Cycle Disorders Overview), arginase deficiency rarely results in elevated plasma ammonia concentration in the newborn period, even in individuals with two null mutations. Episodic hyperammonemia of variable degree may occur but is rarely severe enough to be life threatening or to cause death. Hyperammonemia is often recognized only if blood ammonia or plasma amino acid concentrations are obtained during an acute illness. Although data are not available, it appears that more than 75% of affected individuals survive their disease and live long, albeit handicapped lives. ... |
Genotype-Phenotype Correlations GeneReviews | No genotype-phenotype correlations have been described.... |
Differential Diagnosis GeneReviews | Hyperammonemia. Arginase is the sixth and final enzyme of the eight known steps in the urea cycle. See Urea Cycle Disorders Overview for approaches to distinguish: (1) other causes of hyperammonemia from a urea cycle disorder and (2) the differences between the urea cycle disorders themselves. ... |
Management GeneReviews | To establish the extent of disease in an individual diagnosed with arginase deficiency, the following evaluations are recommended:... |
Molecular genetics GeneReviews |
Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.... Gene SymbolChromosomal LocusProtein NameLocus SpecificHGMDARG16q23 | Arginase-1ARG1 @ LOVDARG1Data are compiled from the following standard references: gene symbol from HGNC; chromosomal locus, locus name, critical region, complementation group from OMIM; protein name from UniProt. For a description of databases (Locus Specific, HGMD) to which links are provided, click here.Table B. OMIM Entries for Arginase Deficiency (View All in OMIM) View in own window 207800ARGININEMIA 608313ARGINASE, LIVER; ARG1Normal allelic variants. ARG1 is approximately 10-15 kb in length and comprises eight exons and seven introns (see Ensembl Gene Report). Pathologic allelic variants. Mutations are located throughout the coding region of the gene. Missense mutations are generally found in amino acids that have been highly conserved during evolution and especially in sequences involved in the active site of the enzyme. Chain-terminating mutations and deletions and insertions may be found anywhere in the gene [Vockley et al 1996]. A deletion of nearly the entire gene has also been described [Korman et al 2004].Normal gene product. Arginase-1 is 322 amino acids long and is manganese dependent; it exists in nature as a trimer, and, unlike arginase-2, which is located in mitochondrial matrix, is located in the cytosol. The enzyme is highly stable and can be completely reactivated, if not denatured, by treating with manganese at 65° C. Expression is highest in the liver and RBCs (Reference sequence NP_000036.2).Abnormal gene product. The mutated arginase-1 protein is rarely stable enough to be detected in the mature red blood cells of affected individuals by immunologic means. A second, ancestral arginase gene (ARG2) located on 14q, is expressed in different tissue and cell types and may partially compensate for deficiency of arginase-1. It is thought that from an evolutionary perspective, ARG2 existed first and that ARG1 arose from it following a gene duplication event. The two gene products are more than 50% homologous at the amino acid level [Morris et al 1997, Iyer et al 1998].