CHARGE syndrome

General Information (adopted from Orphanet):

Synonyms, Signs: CHARGE ASSOCIATION--COLOBOMA, HEART ANOMALY, CHOANAL ATRESIA, RETARDATION, GENITAL AND EAR ANOMALIES
HHS
hall-hittner syndrome
Coloboma - heart defects - atresia choanae - retardation of growth and development - genitourinary problems - ear abnormalities
CHARGE association
Number of Symptoms 185
OrphanetNr: 138
OMIM Id: 214800
ICD-10: Q87.8
UMLs: C0265354
MeSH: D058747
MedDRA: 10064063
Snomed: 47535005

Prevalence, inheritance and age of onset:

Prevalence: No data available.
Inheritance: Autosomal dominant
Unknown
[Orphanet]
Age of onset: Neonatal
[Orphanet]

Disease classification (adopted from Orphanet):

Parent Diseases: Genetic multiple congenital anomalies/dysmorphic syndrome - variable intellectual deficit
 -Rare genetic disease
Lens shape anomaly
 -Rare eye disease
 -Rare genetic disease
Multiple congenital anomalies/dysmorphic syndrome - variable intellectual deficit
 -Rare developmental defect during embryogenesis
Rare syndrome with cardiac malformations
 -Rare developmental defect during embryogenesis
 -Rare genetic disease
Syndrome or malformation associated with head and neck malformations
 -Rare developmental defect during embryogenesis
 -Rare genetic disease
 -Rare maxillo-facial surgical disease
 -Rare otorhinolaryngologic disease
Syndrome with hypogonadotropic hypogonadism
 -Rare endocrine disease
 -Rare genetic disease
 -Rare gynecologic or obstetric disease
Syndromic developmental defect of the eye
 -Rare developmental defect during embryogenesis
 -Rare eye disease
 -Rare genetic disease
Syndromic genetic deafness
 -Rare developmental defect during embryogenesis
 -Rare genetic disease
 -Rare otorhinolaryngologic disease
Syndromic renal or urinary tract malformation
 -Rare developmental defect during embryogenesis
 -Rare genetic disease
 -Rare renal disease
Syndromic urogenital tract malformation
 -Rare developmental defect during embryogenesis
 -Rare genetic disease
 -Rare urogenital disease

Symptom Information: Sort by abundance 

1
(HPO:0011968) Feeding difficulties 240 / 7739
2
(HPO:0000316) Hypertelorism Occasional [Orphanet] 7.5000 % [HPO] 644 / 7739
3
(HPO:0000528) Anophthalmia 85.0000 % [HPO] 42 / 7739
4
(HPO:0000568) Microphthalmia 183 / 7739
5
(HPO:0000612) Iris coloboma Very frequent [Orphanet] 85.0000 % [HPO] 116 / 7739
6
(HPO:0000588) Optic nerve coloboma Very frequent [Orphanet] 27 / 7739
7
(HPO:0000479) Abnormality of the retina Very frequent [Orphanet] 74 / 7739
8
(HPO:0000480) Retinal coloboma 85.0000 % [HPO] 16 / 7739
9
(HPO:0000541) Retinal detachment Frequent [Orphanet] 87 / 7739
10
(HPO:0000488) Retinopathy Frequent [Orphanet] 75 / 7739
11
(HPO:0000589) Coloboma 47 / 7739
12
(HPO:0000625) Cleft eyelid Occasional [Orphanet] 31 / 7739
13
(HPO:0000639) Nystagmus Frequent [Orphanet] 555 / 7739
14
(HPO:0000486) Strabismus Frequent [Orphanet] 576 / 7739
15
(HPO:0000505) Visual impairment Very frequent [Orphanet] 297 / 7739
16
(HPO:0000572) Visual loss Occasional [Orphanet] 272 / 7739
17
(HPO:0000501) Glaucoma Frequent [Orphanet] 180 / 7739
18
(HPO:0000632) Lacrimation abnormality Occasional [Orphanet] 42 / 7739
19
(HPO:0000508) Ptosis 7.5000 % [HPO] 459 / 7739
20
(HPO:0002093) Respiratory insufficiency Occasional [Orphanet] 410 / 7739
21
(HPO:0000246) Sinusitis Frequent [Orphanet] 73 / 7739
22
(HPO:0001601) Laryngomalacia Occasional [Orphanet] 61 / 7739
23
(HPO:0002575) Tracheoesophageal fistula Occasional [Orphanet] 7.5000 % [HPO] 54 / 7739
24
(HPO:0004322) Short stature Very frequent [Orphanet] 1232 / 7739
25
(HPO:0001888) Lymphopenia 43 / 7739
26
(HPO:0002901) Hypocalcemia 56 / 7739
27
(HPO:0030680) Abnormality of cardiovascular system morphology Frequent [Orphanet] 355 / 7739
28
(HPO:0001631) Atria septal defect 274 / 7739
29
(HPO:0001629) Ventricular septal defect Very frequent [Orphanet] 316 / 7739
30
(HPO:0001305) Dandy-Walker malformation Occasional [Orphanet] 79 / 7739
31
(HPO:0001719) Double outlet right ventricle 12 / 7739
32
(HPO:0001643) Patent ductus arteriosus Frequent [Orphanet] 228 / 7739
33
(HPO:0001642) Pulmonic stenosis 89 / 7739
34
(HPO:0001636) Tetralogy of Fallot Frequent [Orphanet] 104 / 7739
35
(HPO:0000824) Growth hormone deficiency 7.5000 % [HPO] 56 / 7739
36
(HPO:0010628) Facial palsy Occasional [Orphanet] 146 / 7739
37
(HPO:0010978) Abnormality of immune system physiology Occasional [Orphanet] 148 / 7739
38
(HPO:0011331) Hemifacial atrophy Frequent [Orphanet] 79 / 7739
39
(HPO:0005352) Severe T-cell immunodeficiency Occasional [Orphanet] 20 / 7739
40
(HPO:0001252) Muscular hypotonia Frequent [Orphanet] 990 / 7739
41
(HPO:0012639) Abnormality of nervous system morphology Frequent [Orphanet] 25 / 7739
42
(HPO:0001291) Abnormality of the cranial nerves Frequent [Orphanet] 27 / 7739
43
(HPO:0006824) Cranial nerve paralysis Occasional [Orphanet] 81 / 7739
44
(HPO:0004408) Abnormality of the sense of smell Frequent [Orphanet] 28 / 7739
45
(HPO:0000458) Anosmia 49 / 7739
46
(HPO:0002066) Gait ataxia Very frequent [Orphanet] 327 / 7739
47
(HPO:0000708) Behavioral abnormality Frequent [Orphanet] 212 / 7739
48
(HPO:0000717) Autism Frequent [Orphanet] 108 / 7739
49
(HPO:0001249) Intellectual disability 100.0000 % [HPO] 1089 / 7739
50
(HPO:0000722) Obsessive-compulsive behavior Frequent [Orphanet] 35 / 7739
51
(HPO:0100716) Self-injurious behavior Occasional [Orphanet] 43 / 7739
52
(HPO:0002167) Neurological speech impairment Frequent [Orphanet] 308 / 7739
53
(HPO:0000752) Hyperactivity Frequent [Orphanet] 140 / 7739
54
(HPO:0002015) Dysphagia Very frequent [Orphanet] 301 / 7739
55
(HPO:0001511) Intrauterine growth retardation Occasional [Orphanet] 358 / 7739
56
(HPO:0001561) Polyhydramnios Frequent [Orphanet] 191 / 7739
57
(HPO:0001161) Hand polydactyly 7.5000 % [HPO] 71 / 7739
58
(HPO:0001177) Preaxial hand polydactyly Occasional [Orphanet] 59 / 7739
59
(HPO:0004209) Clinodactyly of the 5th finger Occasional [Orphanet] 288 / 7739
60
(HPO:0009778) Short thumb 7.5000 % [HPO] 50 / 7739
61
(HPO:0004058) Hand monodactyly rare [HPO:skoehler] 8 / 7739
62
(HPO:0004060) Trident hand Occasional [Orphanet] 13 / 7739
63
(HPO:0200054) Foot monodactyly 6 / 7739
64
(HPO:0001863) Toe clinodactyly Occasional [Orphanet] 12 / 7739
65
(HPO:0001762) Talipes equinovarus Occasional [Orphanet] 309 / 7739
66
(HPO:0002823) Abnormality of the femur Occasional [Orphanet] 61 / 7739
67
(HPO:0001385) Hip dysplasia Occasional [Orphanet] 242 / 7739
68
(HPO:0002992) Abnormality of the tibia Occasional [Orphanet] 51 / 7739
69
(HPO:0010443) Bifid femur rare [HPO:skoehler] 2 / 7739
70
(HPO:0003974) Absent radius rare [HPO:skoehler] 26 / 7739
71
(HPO:0006495) Aplasia/Hypoplasia of the ulna 7 / 7739
72
(HPO:0003022) Hypoplasia of the ulna rare [HPO:skoehler] 40 / 7739
73
(HPO:0001018) Abnormal palmar dermatoglyphics 7.5000 % [HPO] 4 / 7739
74
(HPO:0006191) Deep palmar crease Occasional [Orphanet] 16 / 7739
75
(HPO:0004279) Short palm Occasional [Orphanet] 323 / 7739
76
(HPO:0001171) Split hand 7.5000 % [HPO] 72 / 7739
77
(HPO:0001199) Triphalangeal thumb Occasional [Orphanet] 56 / 7739
78
(HPO:0200021) Down-sloping shoulders 7.5000 % [HPO] 18 / 7739
79
(HPO:0000347) Micrognathia 7.5000 % [HPO] 426 / 7739
80
(HPO:0000252) Microcephaly Occasional [Orphanet] 7.5000 % [HPO] 832 / 7739
81
(HPO:0000772) Abnormality of the ribs 7.5000 % [HPO] 146 / 7739
82
(HPO:0000921) Missing ribs Occasional [Orphanet] 62 / 7739
83
(HPO:0000774) Narrow chest Occasional [Orphanet] 167 / 7739
84
(HPO:0003422) Vertebral segmentation defect Occasional [Orphanet] 95 / 7739
85
(HPO:0002937) Hemivertebrae 7.5000 % [HPO] 41 / 7739
86
(HPO:0002650) Scoliosis Occasional [Orphanet] 7.5000 % [HPO] 705 / 7739
87
(HPO:0002139) Arrhinencephaly 25.0000 % [HPO] 13 / 7739
88
(HPO:0007370) Aplasia/Hypoplasia of the corpus callosum Occasional [Orphanet] 180 / 7739
89
(HPO:0011001) Increased bone mineral density Occasional [Orphanet] 78 / 7739
90
(HPO:0001382) Joint hypermobility Occasional [Orphanet] 231 / 7739
91
(HPO:0002553) Highly arched eyebrow Occasional [Orphanet] 92 / 7739
92
(HPO:0001231) Abnormality of the fingernails Occasional [Orphanet] 116 / 7739
93
(HPO:0002023) Anal atresia 7.5000 % [HPO] 135 / 7739
94
(HPO:0002025) Anal stenosis 7.5000 % [HPO] 23 / 7739
95
(HPO:0002032) Esophageal atresia 19 / 7739
96
(HPO:0002247) Duodenal atresia 13 / 7739
97
(HPO:0002577) Abnormality of the stomach Frequent [Orphanet] 84 / 7739
98
(HPO:0001537) Umbilical hernia Occasional [Orphanet] 206 / 7739
99
(HPO:0001539) Omphalocele 7.5000 % [HPO] 102 / 7739
100
(HPO:0000834) Abnormality of the adrenal glands Occasional [Orphanet] 14 / 7739
101
(HPO:0000823) Delayed puberty 65 / 7739
102
(HPO:0000044) Hypogonadotrophic hypogonadism 25.0000 % [HPO] 56 / 7739
103
(HPO:0000066) Labial hypoplasia 10 / 7739
104
(HPO:0000054) Micropenis Very frequent [Orphanet] 257 / 7739
105
(HPO:0000048) Bifid scrotum Frequent [Orphanet] 36 / 7739
106
(HPO:0000028) Cryptorchidism 347 / 7739
107
(HPO:0000130) Abnormality of the uterus Frequent [Orphanet] 86 / 7739
108
(HPO:0000035) Abnormality of the testis Frequent [Orphanet] 296 / 7739
109
(HPO:0010751) Chin dimple Frequent [Orphanet] 16 / 7739
110
(HPO:0000689) Dental malocclusion Occasional [Orphanet] 114 / 7739
111
(HPO:0000494) Downslanted palpebral fissures 328 / 7739
112
(HPO:0000324) Facial asymmetry 57 / 7739
113
(HPO:0000272) Malar flattening Occasional [Orphanet] 277 / 7739
114
(HPO:0000275) Narrow face Frequent [Orphanet] 76 / 7739
115
(HPO:0000321) Square face 4 / 7739
116
(HPO:0100736) Abnormality of the soft palate Frequent [Orphanet] 6 / 7739
117
(HPO:0000175) Cleft palate 7.5000 % [HPO] 349 / 7739
118
(HPO:0009804) Reduced number of teeth Occasional [Orphanet] 137 / 7739
119
(HPO:0000682) Abnormality of dental enamel Occasional [Orphanet] 102 / 7739
120
(HPO:0000684) Delayed eruption of teeth Frequent [Orphanet] 117 / 7739
121
(HPO:0000204) Cleft upper lip 7.5000 % [HPO] 193 / 7739
122
(HPO:0000160) Narrow mouth Frequent [Orphanet] 188 / 7739
123
(HPO:0000202) Oral cleft Frequent [Orphanet] 120 / 7739
124
(HPO:0010761) Broad columella Frequent [Orphanet] 10 / 7739
125
(HPO:0000453) Choanal atresia Frequent [Orphanet] 76 / 7739
126
(HPO:0004496) Posterior choanal atresia 1 / 7739
127
(HPO:0000445) Wide nose Frequent [Orphanet] 190 / 7739
128
(HPO:0000315) Abnormality of the orbital region Frequent [Orphanet] 18 / 7739
129
(HPO:0000286) Epicanthus Occasional [Orphanet] 371 / 7739
130
(HPO:0000864) Abnormality of the hypothalamus-pituitary axis Occasional [Orphanet] 23 / 7739
131
(HPO:0008213) Gonadotropin deficiency 6 / 7739
132
(HPO:0011390) Morphological abnormality of the inner ear Very frequent [Orphanet] 21 / 7739
133
(HPO:0010515) Aplasia/Hypoplasia of the thymus 17 / 7739
134
(HPO:0000410) Mixed hearing impairment 90.0000 % [HPO] 22 / 7739
135
(HPO:0000389) Chronic otitis media Frequent [Orphanet] 64 / 7739
136
(HPO:0000384) Preauricular skin tag Occasional [Orphanet] 62 / 7739
137
(HPO:0000465) Webbed neck 7.5000 % [HPO] 81 / 7739
138
(HPO:0004404) Abnormality of the nipple 7.5000 % [HPO] 54 / 7739
139
(HPO:0000356) Abnormality of the outer ear Very frequent [Orphanet] 85 / 7739
140
(HPO:0000357) Abnormal location of ears Frequent [Orphanet] 328 / 7739
141
(HPO:0009738) Abnormality of the antihelix Very frequent [Orphanet] 37 / 7739
142
(HPO:0009906) Aplasia/Hypoplasia of the earlobes Very frequent [Orphanet] 41 / 7739
143
(HPO:0011039) Abnormality of the helix Very frequent [Orphanet] 33 / 7739
144
(HPO:0008544) Abnormally folded helix Very frequent [Orphanet] 24 / 7739
145
(HPO:0000378) Cupped ear 90.0000 % [HPO] 34 / 7739
146
(HPO:0000394) Lop ear 90.0000 % [HPO] 6 / 7739
147
(HPO:0008772) Aplasia/Hypoplasia of the external ear Occasional [Orphanet] 67 / 7739
148
(HPO:0100720) Hypoplasia of the ear cartilage Very frequent [Orphanet] 12 / 7739
149
(HPO:0008551) Microtia 90.0000 % [HPO] 98 / 7739
150
(HPO:0000860) Parathyroid hypoplasia 3 / 7739
151
(HPO:0000924) Abnormality of the skeletal system Occasional [Orphanet] 114 / 7739
152
(HPO:0000821) Hypothyroidism 141 / 7739
153
(HPO:0000076) Vesicoureteral reflux Occasional [Orphanet] 94 / 7739
154
(HPO:0100542) Abnormal localization of kidney Occasional [Orphanet] 64 / 7739
155
(HPO:0000085) Horseshoe kidney 39 / 7739
156
(HPO:0000126) Hydronephrosis 119 / 7739
157
(HPO:0000104) Renal agenesis 7.5000 % [HPO] 68 / 7739
158
(HPO:0000089) Renal hypoplasia 7.5000 % [HPO] 78 / 7739
159
(HPO:0000072) Hydroureter Occasional [Orphanet] 146 / 7739
160
(HPO:0012303) Abnormality of the aortic arch Frequent [Orphanet] 57 / 7739
161
(HPO:0008897) Postnatal growth retardation 113 / 7739
162
(HPO:0000365) Hearing impairment Very frequent [Orphanet] 539 / 7739
163
(HPO:0008373) Puberty and gonadal disorders Frequent [Orphanet] 156 / 7739
164
(HPO:0012443) Abnormality of brain morphology Occasional [Orphanet] 45 / 7739
165
(HPO:0002334) Abnormality of the cerebellar vermis Occasional [Orphanet] 137 / 7739
166
(HPO:0012795) Abnormality of the optic disc Very frequent [Orphanet] 187 / 7739
167
(HPO:0002410) Aqueductal stenosis Occasional [Orphanet] 19 / 7739
168
(HPO:0000006) Autosomal dominant inheritance 2518 / 7739
169
(HPO:0001522) Death in infancy Occasional [Orphanet] 275 / 7739
170
(HPO:0040075) Hypopituitarism Frequent [Orphanet] 32 / 7739
171
(HPO:0012815) Hypoplastic female external genitalia Frequent [Orphanet] 36 / 7739
172
(HPO:0400004) Long ear Very frequent [Orphanet] 94 / 7739
173
(HPO:0012758) Neurodevelopmental delay Frequent [Orphanet] 949 / 7739
174
(HPO:0003812) Phenotypic variability 129 / 7739
175
(HPO:0003745) Sporadic 131 / 7739
176
(OMIM) Balance disturbances 1 / 7739
177
(OMIM) Chewing/swallowing difficulties 3 / 7739
178
(OMIM) Humoral defect (in some) 1 / 7739
179
(OMIM) Hypoplastic semicircular canals 1 / 7739
180
(OMIM) Intellectual function may be high in milder cases 1 / 7739
181
(OMIM) Mental retardation, variable severity 2 / 7739
182
(OMIM) Mondini defect 1 / 7739
183
(OMIM) T cell defect, mild to severe 1 / 7739
184
(OMIM) Tibial aplasia (some) 1 / 7739
185
(OMIM) [DEL]Autistic features 43 / 7739

Associated genes:

ClinVar (via SNiPA)

Gene symbol Variation Clinical significance Reference

Additional Information:

Description: (OMIM) CHARGE syndrome is characterized by a pattern of congenital anomalies including choanal atresia and malformations of the heart, inner ear, and retina (summary by Kallen et al., 1999).
Diagnosis OMIM An analysis by Harris et al. (1997) of choanal atresia-associated malformations, present in 47% of the infants studied without chromosome anomalies, indicated that a weak, nonrandom association can be demonstrated between the malformations of the CHARGE complex. If ...
Clinical Description OMIM Choanal atresia (see 608911) is a feature of the CHARGE association: coloboma of the eye; heart anomaly; atresia, choanal; retardation of mental and somatic development; microphallus; ear abnormalities and/or deafness (Pagon et al., 1981). Facial palsy, cleft palate, ...
Molecular genetics OMIM Using an improved method of array comparative genomic hybridization (CGH), Vissers et al. (2004) reported a 2.3-Mb de novo overlapping microdeletion on chromosome 8q12 in 2 individuals with CHARGE syndrome. Sequence analysis of genes located in this region ...
Population genetics OMIM With an estimated birth incidence of 1 in 12,000, CHARGE syndrome is a common cause of congenital anomalies (Kallen et al., 1999).

In a national surveillance study in Canada, Issekutz et al. (2005) found that the ...

Diagnosis GeneReviews Diagnostic criteria for CHARGE syndrome, a multiple malformation syndrome, are based on a combination of major and minor diagnostic characteristics. (CHARGE stands for coloboma, heart defects, choanal atresia, retarded growth and development, genital abnormalities, and ear anomalies.)...
Clinical Description GeneReviews Morbidity and mortality. Neonates with CHARGE syndrome often have multiple life-threatening medical conditions. Blake et al [1990] reported poor survival if one or more of the following were present: cyanotic cardiac lesions, bilateral posterior choanal atresia, and tracheoesophageal fistula. In another study, poor life expectancy correlated with male gender, central nervous system (CNS) malformation, bilateral choanal atresia, and tracheoesophageal fistula [Tellier et al 1998]. Issekutz et al [2005] reported high mortality in infants with atrioventricular septal defects and in infants with a combination of ventriculomegaly and brain stem/cerebellar anomalies (13%). Feeding difficulties were also found to be a major cause of morbidity at all ages....
Genotype-Phenotype Correlations GeneReviews No clear genotype-phenotype correlations exist [Jongmans et al 2006, Lalani et al 2006, Sanlaville et al 2006]....
Differential Diagnosis GeneReviews The 22q11.2 deletion syndrome (del 22q11.2) is characterized by congenital heart disease, particularly conotruncal malformations (tetralogy of Fallot, interrupted aortic arch type IB, perimembranous ventricular septal defect, double outlet right ventricle, and truncus arteriosus); palatal abnormalities, particularly velopharyngeal incompetence (VPI), submucosal cleft palate, and cleft palate; characteristic facial features; and learning difficulties. Additional findings include immune deficiency, hypocalcemia, significant feeding problems, renal anomalies, hearing loss (both conductive and sensorineural), laryngotracheoesophageal anomalies, growth hormone deficiency, autoimmune disorders, seizures (without hypocalcemia), and skeletal abnormalities. The 22q11.2 deletion syndrome is diagnosed in individuals with a submicroscopic deletion of chromosome 22 detected by fluorescence in situ hybridization (FISH) using DNA probes from the DiGeorge chromosomal region (DGCR)....
Management GeneReviews To establish the extent of disease in an individual diagnosed with CHARGE syndrome, the following evaluations are recommended:...
Molecular genetics GeneReviews Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED....