Saethre-Chotzen syndrome
General Information (adopted from Orphanet):
Synonyms, Signs: |
BLEPHAROPHIMOSIS, EPICANTHUS INVERSUS, AND PTOSIS 3, FORMERLY, INCLUDED ACROCEPHALOSYNDACTYLY, TYPE III BPES3, FORMERLY, INCLUDED ACS III ACROCEPHALY, SKULL ASYMMETRY, AND MILD SYNDACTYLY SAETHRE-CHOTZEN SYNDROME WITH EYELID ANOMALIES, INCLUDED CHOTZEN SYNDROME SCS ACS3 Acrocephalosyndactyly type 3 |
Number of Symptoms | 91 |
OrphanetNr: | 794 |
OMIM Id: |
101400
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ICD-10: |
Q87.0 |
UMLs: |
C0175699 |
MeSH: |
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MedDRA: |
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Snomed: |
83015004 |
Prevalence, inheritance and age of onset:
Prevalence: | 3 of 100 000 [Orphanet] |
Inheritance: |
Autosomal dominant [Orphanet] |
Age of onset: |
Neonatal [Orphanet] |
Disease classification (adopted from Orphanet):
Parent Diseases: |
Acrocephalosyndactyly
-Rare bone disease -Rare developmental defect during embryogenesis -Rare genetic disease Craniostenosis associated with a strabismus -Rare eye disease -Rare genetic disease Polymalformative genetic syndrome with increased risk of developing cancer -Rare genetic disease -Rare oncologic disease Ptosis -Rare eye disease -Rare genetic disease |
Symptom Information:
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(HPO:0000035) | Abnormality of the testis | Occasional [Orphanet] | 296 / 7739 | |||
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(HPO:0011331) | Hemifacial atrophy | Very frequent [Orphanet] | 79 / 7739 | |||
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(HPO:0001357) | Plagiocephaly | 106 / 7739 | ||||
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(HPO:0003189) | Long nose | 20 / 7739 | ||||
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(HPO:0000270) | Delayed cranial suture closure | 33 / 7739 | ||||
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(HPO:0000263) | Oxycephaly | 10 / 7739 | ||||
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(HPO:0004443) | Lambdoidal craniosynostosis | 15 / 7739 | ||||
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(HPO:0000444) | Convex nasal ridge | Frequent [Orphanet] | 87 / 7739 | |||
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(HPO:0000294) | Low anterior hairline | Frequent [Orphanet] | 52 / 7739 | |||
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(HPO:0001363) | Craniosynostosis | Very frequent [Orphanet] | 132 / 7739 | |||
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(HPO:0002678) | Skull asymmetry | 4 / 7739 | ||||
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(HPO:0000272) | Malar flattening | 277 / 7739 | ||||
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(HPO:0000248) | Brachycephaly | 222 / 7739 | ||||
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(HPO:0012368) | Flat face | 106 / 7739 | ||||
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(HPO:0000460) | Narrow nose | 14 / 7739 | ||||
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(HPO:0004440) | Coronal craniosynostosis | 38 / 7739 | ||||
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(HPO:0000175) | Cleft palate | 349 / 7739 | ||||
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(HPO:0004425) | Flat forehead | 6 / 7739 | ||||
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(HPO:0000324) | Facial asymmetry | 57 / 7739 | ||||
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(HPO:0011323) | Cleft of chin | 1 / 7739 | ||||
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(HPO:0002697) | Parietal foramina | 12 / 7739 | ||||
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(HPO:0000929) | Abnormality of the skull | Very frequent [Orphanet] | 53 / 7739 | |||
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(HPO:0000174) | Abnormality of the palate | Occasional [Orphanet] | 298 / 7739 | |||
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(HPO:0000316) | Hypertelorism | Frequent [Orphanet] | 644 / 7739 | |||
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(HPO:0000348) | High forehead | 157 / 7739 | ||||
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(HPO:0000327) | Hypoplasia of the maxilla | Occasional [Orphanet] | 129 / 7739 | |||
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(HPO:0000586) | Shallow orbits | 23 / 7739 | ||||
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(HPO:0000189) | Narrow palate | 45 / 7739 | ||||
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(HPO:0000557) | Buphthalmos | 16 / 7739 | ||||
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(HPO:0000614) | Abnormality of the nasolacrimal system | 1 / 7739 | ||||
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(HPO:0000508) | Ptosis | Frequent [Orphanet] | 459 / 7739 | |||
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(HPO:0000486) | Strabismus | Frequent [Orphanet] | 576 / 7739 | |||
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(HPO:0000572) | Visual loss | Occasional [Orphanet] | 272 / 7739 | |||
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(HPO:0008772) | Aplasia/Hypoplasia of the external ear | Frequent [Orphanet] | 67 / 7739 | |||
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(HPO:0011039) | Abnormality of the helix | Frequent [Orphanet] | 33 / 7739 | |||
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(HPO:0000356) | Abnormality of the outer ear | Frequent [Orphanet] | 85 / 7739 | |||
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(HPO:0000357) | Abnormal location of ears | Occasional [Orphanet] | 328 / 7739 | |||
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(HPO:0000407) | Sensorineural hearing impairment | Occasional [Orphanet] | 524 / 7739 | |||
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(HPO:0008551) | Microtia | 98 / 7739 | ||||
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(HPO:0009899) | Prominent crus of helix | 1 / 7739 | ||||
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(HPO:0000372) | Abnormality of the auditory canal | Frequent [Orphanet] | 49 / 7739 | |||
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(HPO:0000365) | Hearing impairment | Occasional [Orphanet] | 539 / 7739 | |||
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(HPO:0000405) | Conductive hearing impairment | Occasional [Orphanet] | 164 / 7739 | |||
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(HPO:0000369) | Low-set ears | 372 / 7739 | ||||
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(HPO:0002342) | Intellectual disability, moderate | 37 / 7739 | ||||
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(HPO:0001250) | Seizures | Occasional [Orphanet] | 1245 / 7739 | |||
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(HPO:0001332) | Dystonia | Frequent [Orphanet] | 197 / 7739 | |||
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(HPO:0002516) | Increased intracranial pressure | Occasional [Orphanet] | 47 / 7739 | |||
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(HPO:0002315) | Headache | Occasional [Orphanet] | 175 / 7739 | |||
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(HPO:0003002) | Breast carcinoma | 23 / 7739 | ||||
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(HPO:0002974) | Radioulnar synostosis | Occasional [Orphanet] | 52 / 7739 | |||
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(HPO:0004691) | 2-3 toe syndactyly | 50 / 7739 | ||||
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(HPO:0003312) | Abnormal form of the vertebral bodies | Occasional [Orphanet] | 172 / 7739 | |||
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(HPO:0001156) | Brachydactyly syndrome | 180 / 7739 | ||||
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(HPO:0010621) | Cutaneous syndactyly of toes | 36 / 7739 | ||||
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(HPO:0010104) | Absent first metatarsal | 1 / 7739 | ||||
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(HPO:0001159) | Syndactyly | 140 / 7739 | ||||
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(HPO:0001822) | Hallux valgus | Occasional [Orphanet] | 70 / 7739 | |||
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(HPO:0006101) | Finger syndactyly | Very frequent [Orphanet] | 198 / 7739 | |||
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(HPO:0000954) | Single transverse palmar crease | Frequent [Orphanet] | 162 / 7739 | |||
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(HPO:0009700) | Finger symphalangism | 55 / 7739 | ||||
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(HPO:0009951) | Partial duplication of the distal phalanx of the 2nd finger | 1 / 7739 | ||||
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(HPO:0009968) | Partial duplication of the distal phalanx of the 3rd finger | 1 / 7739 | ||||
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(HPO:0002650) | Scoliosis | Occasional [Orphanet] | 705 / 7739 | |||
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(HPO:0002644) | Abnormality of pelvic girdle bone morphology | 31 / 7739 | ||||
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(HPO:0004279) | Short palm | Frequent [Orphanet] | 323 / 7739 | |||
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(HPO:0001770) | Toe syndactyly | 149 / 7739 | ||||
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(HPO:0004209) | Clinodactyly of the 5th finger | 288 / 7739 | ||||
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(HPO:0004322) | Short stature | Occasional [Orphanet] | 1232 / 7739 | |||
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(HPO:0030680) | Abnormality of cardiovascular system morphology | Occasional [Orphanet] | 355 / 7739 | |||
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(HPO:0002104) | Apnea | Occasional [Orphanet] | 106 / 7739 | |||
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(OMIM) | Mild syndactyly | 4 / 7739 | ||||
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(OMIM) | Apical cartilage deformity | 1 / 7739 | ||||
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(MedDRA:10072883) | Brachydactyly | 153 / 7739 | ||||
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(OMIM) | Intracranial hypertension due to multisutural cranial fusion | 1 / 7739 | ||||
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(HPO:0001522) | Death in infancy | Occasional [Orphanet] | 275 / 7739 | |||
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(OMIM) | Large ischia | 1 / 7739 | ||||
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(OMIM) | Thin, long, pointed nose | 2 / 7739 | ||||
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(HPO:0000006) | Autosomal dominant inheritance | 2518 / 7739 | ||||
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(HPO:0003828) | Variable expressivity | 130 / 7739 | ||||
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(OMIM) | Increased risk of breast cancer in women | 1 / 7739 | ||||
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(OMIM) | S-shaped blepharoptosis | 1 / 7739 | ||||
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(HPO:0012795) | Abnormality of the optic disc | Occasional [Orphanet] | 187 / 7739 | |||
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(OMIM) | Lacrimal duct abnormalities | 3 / 7739 | ||||
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(OMIM) | Long and prominent ear crus | 1 / 7739 | ||||
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(HPO:0012758) | Neurodevelopmental delay | Occasional [Orphanet] | 949 / 7739 | |||
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(HPO:0030680) | Abnormality of cardiovascular system morphology | 355 / 7739 | ||||
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(OMIM) | Bifid terminal phalanges digits 2 and 3 | 1 / 7739 | ||||
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(OMIM) | Small ilia | 5 / 7739 | ||||
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(OMIM) | High, flat forehead | 1 / 7739 | ||||
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(OMIM) | Craniosynostosis of coronal, lambdoid, and/or metopic sutures | 1 / 7739 |
Associated genes:
ClinVar (via SNiPA)
Gene symbol | Variation | Clinical significance | Reference |
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Additional Information:
Diagnosis OMIM |
Johnson et al. (1998) found facial asymmetry, low frontal hairline, and ptosis to be the most helpful for identifying patients with Saethre-Chotzen syndrome in the absence of pathognomonic features such as 2,3 syndactyly of fingers and duplicated halluces. ... |
Clinical Description OMIM |
In the family described by Saethre (1931), a mother, 2 daughters, and probably other maternal relatives showed mild acrocephaly, asymmetry of the skull, and partial soft tissue syndactyly of fingers 2 and 3 and toes 3 and 4. ... |
Molecular genetics OMIM |
Howard et al. (1997) and El Ghouzzi et al. (1997) demonstrated that the Saethre-Chotzen syndrome results from mutations in the TWIST1 gene (601622). They were prompted to evaluate the TWIST gene, which encodes a basic helix-loop-helix transcription factor, ... |
Diagnosis GeneReviews | With the ability to detect mutations in TWIST1, the phenotypic spectrum of Saethre-Chotzen syndrome (SCS) is becoming increasingly broad: phenotypes that are both milder and more severe than classic SCS are recognized.... Gene SymbolTest MethodMutations DetectedMutation Detection Frequency by Test Method 1Test AvailabilityTWIST1Sequence analysis of coding region | Sequence variants 2 in exon 1 3>50%68% 4Clinical Deletion/ duplication analysis 5Exonic or whole-gene deletions11% 6 – 28% 7Cytogenetic/FISHTranslocations / inversions involving 7p213.6% 61. The ability of the test method used to detect a mutation that is present in the indicated gene2. Examples of mutations detected by sequence analysis may include small intragenic deletions/insertions and missense, nonsense, and splice site mutations.3. All intragenic mutations identified to date are in exon 1, which contains the entire coding region. 4. In 37 individuals with classic features of SCS (test method not specified) [Cai et al 2003a]5. Testing that identifies deletions/duplications not readily detectable by sequence analysis of the coding and flanking intronic regions of genomic DNA; included in the variety of methods that may be used are: quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), and chromosomal microarray (CMA) that includes this gene/chromosome segment.6. Cai et al [2003a]7. Gripp et al [2001]Interpretation of test results. For issues to consider in interpretation of sequence analysis results, click here.Testing StrategyTo confirm/establish the diagnosis in a proband. Confirmation of the diagnosis in a proband requires identification of a disease-causing TWIST1 mutation using the following approach:Molecular genetic testing of TWIST1 by sequence analysis; if no mutation is identified, perform deletion/duplication analysis.If no TWIST1 mutation can be identified by sequence analysis and deletion/duplication analysis AND other disorders such as Muenke syndrome, caused by the p.Pro250Arg mutation in FGFR3 [Muenke et al 1997] have been excluded OR if the phenotype and/or family history suggest a complex chromosome abnormality, consider cytogenetic/FISH analysis. Prenatal diagnosis and preimplantation genetic diagnosis for at-risk pregnancies require prior identification of the disease-causing mutation in the family. Genetically Related (Allelic) DisordersMutations in the TWIST box, the highly conserved C-terminus that binds and inhibits RUNX2 transactivation, are associated with isolated sagittal or unilateral coronal synostosis, not SCS [Seto et al 2007].
Clinical Description GeneReviews | With the ability to detect mutations in TWIST1, the phenotypic spectrum of Saethre-Chotzen syndrome (SCS) is becoming increasingly broad. Both milder and more severe phenotypes are recognized.... |
Genotype-Phenotype Correlations GeneReviews | Most mutations causing SCS are intragenic and cause haploinsufficiency of the protein product, Twist-related protein 1. ... |
Differential Diagnosis GeneReviews | Muenke syndrome is a distinct condition caused by the specific point mutation p.Pro250Arg in FGFR3 (encoding fibroblast growth factor receptor 3) [Muenke et al 1997]. Penetrance is reduced [Paznekas et al 1998].... |
Management GeneReviews | To establish the extent of disease in an individual diagnosed with Saethre-Chotzen syndrome (SCS), the following evaluations are recommended: ... |
Molecular genetics GeneReviews |
Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.... Gene SymbolChromosomal LocusProtein NameLocus SpecificHGMDTWIST17p21 | Twist-related protein 1TWIST1 homepage - Mendelian genesTWIST1Data are compiled from the following standard references: gene symbol from HGNC; chromosomal locus, locus name, critical region, complementation group from OMIM; protein name from UniProt. For a description of databases (Locus Specific, HGMD) to which links are provided, click here.Table B. OMIM Entries for Saethre-Chotzen Syndrome (View All in OMIM) View in own window 101400SAETHRE-CHOTZEN SYNDROME; SCS 601622TWIST, DROSOPHILA, HOMOLOG OF, 1; TWIST1Molecular Genetic PathogenesisLittle is known about the mechanism by which alteration in Twist-related protein 1 signaling pathways leads to craniosynostosis. Clinically, Saethre-Chotzen syndrome (SCS) has phenotypic overlap with other craniosynostosis syndromes, particularly Muenke syndrome, caused by the p.Pro250Arg mutation in FGFR3 [Muenke et al 1997]. Although clinically leading to the same primary malformation, premature fusion of the calvaria, it is not known if the two genes lie in the same, parallel, or independent pathways during calvarial development. Several genes and gene families, including TWIST1, FGFs, FGFRs, MSX2, ALX4, EFNB1, EFNA4, NELL1, RUNX2, BMPs, TGF-ßs, SHH, IGFs, IGFRs, and IGFBPs regulate suture patency, likely by interacting with one another. One model proposes that Twist-related protein 1 functions by forming either homodimers or heterodimers that have distinct regulatory interactions with other genes, such as FGFRs and BMPs. Haploinsufficiency of Twist-related protein 1 changes the ratio of dimers and, therefore, the expression of downstream signaling molecules. This model also supports the finding that the coronal sutures are predominantly fused in SCS, since these sutures have a higher level of gene expression of downstream activators, as shown in mice models [Connerney et al 2008, Miraoui & Marie 2010].Normal allelic variants. TWIST1 comprises two exons and one intron. The first exon contains an open reading frame encoding a 202-amino acid protein, followed by a 45-bp untranslated portion, a 536-bp intron, and a second untranslated exon (Reference sequences NM_000474.3 and NP_000465.1). At least 50 normal allelic variants have been identified within TWIST1 [Fredman et al 2002]. Of these, eight intragenic normal allelic variants have been identified within the coding region [Kasparcova et al 1998, Gripp et al 2000, SNP Database]. In addition, Elanko et al [2001] described a variation in the polyglycine tract length of TWIST1 in individuals with craniosynostosis. None of these rearrangements was consistently associated with clinical disease; thus, they were considered normal variants or at most weakly pathologic variants. Pathologic allelic variants. To date, 126 mutations in TWIST1 have been determined to cause SCS, which results from functional haploinsufficiency of Twist-related protein 1, a basic helix-loop-helix (HLH) transcription factor. These include 73 distinct nucleotide substitutions (missense and nonsense), 53 deletions/insertions/duplications/indels, and complex rearrangements [Johnson et al 1998, Zackai & Stolle 1998, Gripp et al 2000, Chun et al 2002, Seto et al 2007, Human Gene Mutation Database 2011 (registration required)]. All of the point mutations are located within the coding region; no splice mutations, intronic mutations, or changes within the second exon have been reported. No apparent mutational "hot spot" has been identified.Nonsense mutations that preclude translation of the DNA binding domain and the HLH domain have been identified from the 5' end of the coding sequence to the end of the HLH motif. Missense mutations are clustered within the functional domains. Four persons have been identified with mutations in the C-terminus, known as the TWIST box, a highly conserved region which binds and inhibits RUNX2 activation [Kress et al 2006, Seto et al 2007, Pena et al 2010]. RUNX2 is considered the “master switch” for osteoblast differentiation and activity. The individuals with TWIST box mutations had single suture synostosis (one sagittal and one unilateral coronal) and no additional features of SCS.Normal gene product. The Twist-related protein 1 is a member of a large family of basic helix-loop-helix (bHLH) transcriptional regulators. The bHLH motif is identified by the basic domain that mediates specific DNA binding, the HLH domains containing two amphipathic helices that act as dimerization domains [Murre et al 1994], and a loop region that separates the two helices. A motif of mainly basic residues permits HLH protein to bind to a consensus hexanucleotide E-box (CANNTG) [Voronova & Baltimore 1990]. Dimerization is a prerequisite for DNA binding; it depends on the spacing between the helices and leads to the formation of a bipartite DNA-binding groove by the basic domain. Abnormal gene product. Germline TWIST1 mutations of lead to haploinsufficiency [el Ghouzzi et al 2000]. Nonsense mutations predict the synthesis of truncated proteins or nonsense-mediated mRNA decay and result in a lack of abnormal protein, thereby leading to functional haploinsufficiency. Missense mutations involving the helical domains lead to a loss of heterodimer formation that alters nuclear translocation. In-frame insertion or missense mutations within the loop domain alter dimer formation, but not the nuclear location of the protein. These data suggest that protein degradation and altered subcellular localization account for the loss of functional Twist-related protein 1 from the mutant allele in individuals with SCS. The suggestion is further supported by the finding of premature fusion of sutures in twist-null/+ heterozygous mice [el Ghouzzi et al 1997, Bourgeois et al 1998, Carver et al 2002]. Click here for information on animal models (pdf).