Schimke immuno-osseous dysplasia
General Information (adopted from Orphanet):
Synonyms, Signs: |
SCHIMKE IMMUNOOSSEOUS DYSPLASIA SIOD Spondyloepiphyseal dysplasia - nephrotic syndrome Schimke syndrome |
Number of Symptoms | 68 |
OrphanetNr: | 1830 |
OMIM Id: |
242900
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ICD-10: |
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UMLs: |
C0877024 |
MeSH: |
C536629 |
MedDRA: |
10048699 |
Snomed: |
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Prevalence, inheritance and age of onset:
Prevalence: | 50 cases [Orphanet] |
Inheritance: |
Autosomal recessive [Orphanet] |
Age of onset: |
Neonatal Infancy [Orphanet] |
Disease classification (adopted from Orphanet):
Parent Diseases: |
Immuno-osseous dysplasia
-Rare genetic disease -Rare immune disease Malformative syndrome with dentinogenesis imperfecta -Rare developmental defect during embryogenesis -Rare genetic disease -Rare odontologic disease Primary glomerular disease -Rare genetic disease -Rare renal disease Spondyloepiphyseal dysplasia and spondyloepimetaphyseal dysplasia -Rare bone disease -Rare developmental defect during embryogenesis -Rare genetic disease |
Symptom Information:
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(HPO:0000100) | Nephrotic syndrome | Very frequent [Orphanet] | 83 / 7739 | |||
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(HPO:0000097) | Focal segmental glomerulosclerosis | 37 / 7739 | ||||
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(HPO:0000093) | Proteinuria | Very frequent [Orphanet] | 169 / 7739 | |||
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(HPO:0100820) | Glomerulopathy | Very frequent [Orphanet] | 46 / 7739 | |||
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(HPO:0000083) | Renal insufficiency | 232 / 7739 | ||||
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(HPO:0100817) | Renovascular hypertension | 9 / 7739 | ||||
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(HPO:0005105) | Abnormal nasal morphology | Very frequent [Orphanet] | 114 / 7739 | |||
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(HPO:0000470) | Short neck | Very frequent [Orphanet] | 345 / 7739 | |||
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(HPO:0000414) | Bulbous nose | 63 / 7739 | ||||
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(HPO:0005280) | Depressed nasal bridge | Very frequent [Orphanet] | 381 / 7739 | |||
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(HPO:0000691) | Microdontia | Very frequent [Orphanet] | 104 / 7739 | |||
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(HPO:0000483) | Astigmatism | 67 / 7739 | ||||
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(HPO:0007759) | Opacification of the corneal stroma | 77 / 7739 | ||||
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(HPO:0007957) | Corneal opacity | 84 / 7739 | ||||
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(HPO:0000545) | Myopia | 286 / 7739 | ||||
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(HPO:0001270) | Motor delay | 322 / 7739 | ||||
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(HPO:0002515) | Waddling gait | 56 / 7739 | ||||
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(HPO:0002925) | Thyroid-stimulating hormone excess | 12 / 7739 | ||||
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(HPO:0003521) | Disproportionate short-trunk short stature | 29 / 7739 | ||||
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(HPO:0006453) | Lateral displacement of the femoral head | 1 / 7739 | ||||
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(HPO:0002655) | Spondyloepiphyseal dysplasia | 21 / 7739 | ||||
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(HPO:0001385) | Hip dysplasia | Very frequent [Orphanet] | 242 / 7739 | |||
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(HPO:0005930) | Abnormality of epiphysis morphology | Very frequent [Orphanet] | 119 / 7739 | |||
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(HPO:0002938) | Lumbar hyperlordosis | 73 / 7739 | ||||
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(HPO:0002942) | Thoracic kyphosis | 14 / 7739 | ||||
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(HPO:0000938) | Osteopenia | 138 / 7739 | ||||
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(HPO:0003307) | Hyperlordosis | Very frequent [Orphanet] | 122 / 7739 | |||
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(HPO:0003182) | Shallow acetabular fossae | 10 / 7739 | ||||
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(HPO:0000926) | Platyspondyly | 150 / 7739 | ||||
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(HPO:0003090) | Hypoplasia of the capital femoral epiphysis | 15 / 7739 | ||||
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(HPO:0003300) | Ovoid vertebral bodies | 21 / 7739 | ||||
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(HPO:0003312) | Abnormal form of the vertebral bodies | Very frequent [Orphanet] | 172 / 7739 | |||
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(HPO:0001538) | Protuberant abdomen | 36 / 7739 | ||||
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(HPO:0004322) | Short stature | Very frequent [Orphanet] | 1232 / 7739 | |||
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(HPO:0001511) | Intrauterine growth retardation | Very frequent [Orphanet] 50% [HPO:probinson] | 358 / 7739 | |||
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(HPO:0003498) | Disproportionate short stature | 28 / 7739 | ||||
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(HPO:0000995) | Melanocytic nevus | Very frequent [Orphanet] | 63 / 7739 | |||
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(HPO:0001034) | Hypermelanotic macule | 22 / 7739 | ||||
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(HPO:0002213) | Fine hair | 77 / 7739 | ||||
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(HPO:0002208) | Coarse hair | 58 / 7739 | ||||
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(HPO:0000957) | Cafe-au-lait spot | Frequent [Orphanet] | 84 / 7739 | |||
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(HPO:0002326) | Transient ischemic attack | 13 / 7739 | ||||
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(HPO:0002634) | Arteriosclerosis | 3 / 7739 | ||||
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(HPO:0000822) | Hypertension | 224 / 7739 | ||||
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(HPO:0001873) | Thrombocytopenia | Very frequent [Orphanet] | 224 / 7739 | |||
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(HPO:0002843) | Abnormality of T cells | 7 / 7739 | ||||
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(HPO:0001888) | Lymphopenia | Very frequent [Orphanet] | 43 / 7739 | |||
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(HPO:0001875) | Neutropenia | 83 / 7739 | ||||
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(HPO:0001903) | Anemia | Very frequent [Orphanet] | 289 / 7739 | |||
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(HPO:0010701) | Abnormal immunoglobulin level | 49 / 7739 | ||||
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(HPO:0001620) | High pitched voice | 32 / 7739 | ||||
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(HPO:0005352) | Severe T-cell immunodeficiency | Very frequent [Orphanet] | 20 / 7739 | |||
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(HPO:0002719) | Recurrent infections | 107 / 7739 | ||||
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(OMIM) | Adult male height 136-157 cm | 1 / 7739 | ||||
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(OMIM) | Normal growth hormone studies | 1 / 7739 | ||||
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(OMIM) | Decreased CD4+ and CD3+/CD4+ lymphocytes | 1 / 7739 | ||||
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(OMIM) | Absent mitogenic response | 1 / 7739 | ||||
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(OMIM) | Normal intelligence | 81 / 7739 | ||||
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(OMIM) | Cerebral infarcts | 2 / 7739 | ||||
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(OMIM) | Moyamoya | 1 / 7739 | ||||
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(HPO:0000007) | Autosomal recessive inheritance | 2538 / 7739 | ||||
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(OMIM) | Protruding abdomen | 2 / 7739 | ||||
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(OMIM) | T-cell deficiency | 2 / 7739 | ||||
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(OMIM) | Slanted acetabular roofs | 1 / 7739 | ||||
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(OMIM) | Perihilar mesangial deposition of proteinaceous material | 1 / 7739 | ||||
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(OMIM) | Short, broad iliac bones | 1 / 7739 | ||||
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(OMIM) | Adult female height 107-143 cm | 1 / 7739 | ||||
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(OMIM) | Scarred glomerular tufts | 1 / 7739 |
Associated genes:
ClinVar (via SNiPA)
Gene symbol | Variation | Clinical significance | Reference |
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Additional Information:
Clinical Description OMIM |
This disorder was first described by Schimke et al. (1974) as 'chondroitin-6-sulfate mucopolysaccharidosis.' Later studies did not confirm the mucopolysacchariduria and excluded mucopolysaccharidosis (Spranger et al., 1981). The disorder is characterized by the combination of a spondyloepiphyseal dysplasia ... |
Genotype-Phenotype Correlations OMIM |
Elizondo et al. (2009) characterized the effects of various SIOD-associated SMARCAL1 mutations, including E848X (606622.0001) and R586W (606622.0006), in patient tissues and cell lines, and observed that the mutations affected protein expression, stability, subcellular localization, chromatin binding, and ... |
Molecular genetics OMIM |
Using genomewide linkage analysis and a positional cloning approach, Boerkoel et al. (2002) determined that mutations in SMARCAL1 (606622) are responsible for SIOD. Through analysis of data from persons with SIOD in 26 unrelated families, they observed that ... |
Diagnosis GeneReviews | Schimke immunoosseous dysplasia (SIOD) is diagnosed on the basis of clinical findings. The clinical diagnosis of SIOD is suspected in individuals with the following:... Gene SymbolTest Method Mutations Detected Mutation Detection Frequency by Test Method 1Test AvailabilitySMARCAL1Sequence analysis | Sequence variants 2~90% Clinical 1. The ability of the test method used to detect a mutation that is present in the indicated gene2. Examples of mutations detected by sequence analysis may include small intragenic deletions/insertions and missense, nonsense, and splice site mutations.Testing StrategyTo confirm/establish the diagnosis in a proband. SIOD is diagnosed based on clinical features. Molecular genetic testing confirms the diagnosis and detects the causative mutations in 50%-60% of affected individuals.Carrier testing for at-risk relatives requires prior identification of the disease-causing mutations in the family.Note: Carriers are heterozygotes for this autosomal recessive disorder and are not at risk of developing the disorder.Prenatal diagnosis and preimplantation genetic diagnosis (PGD) for at-risk pregnancies require prior identification of the disease-causing mutations in the family.Genetically Related (Allelic) DisordersTo date, mutations of SMARCAL1 have not been identified in any other disorders.
Clinical Description GeneReviews | Schimke immunoosseous dysplasia (SIOD) is a multisystem progressive disorder that was first described by Schimke et al [1971] and later defined by Ehrich et al [1990], Spranger et al [1991], and Ehrich et al [1995]. Table 2 indicates the frequencies of the clinical findings in this condition based on currently published reports. ... FeatureNumber of Affected Individuals with FeatureTotal Individuals with SIODPhysical featuresBroad and low nasal bridge | 37 (65%)57Bulbous nasal tip43 (80%)54Microdontia11 (39%)28Pigmented macules44 (76%)58Unusual hair30 (63%)48Short neck45 (83%)54Short trunk47 (82%)57Lumbar lordosis41 (75%)55Protruded abdomen44 (80%)55Corneal opacities9 (16%)57DevelopmentSchooling delay6 (23%)26Developmental delay14 (26%)54GrowthIUGR31 (72%)43Decreased postnatal growth rate/short stature59 (98%)60EndocrineAbnormal TFTs21 (44%)48SkeletonOvoid flat vertebrae42 (79%)53Hypoplastic pelvis34 (68%)50Abnormal femoral heads43 (84%)51HematologyT-cell deficiency38 (83%)46Lymphopenia46 (81%)57Neutropenia21 (41%)51Thrombocytopenia17 (31%)55Anemia30 (59%)51KidneyProteinuria or nephropathy57 (98%)58FSGS34 (79%)43VasculatureHeadaches22 (49%)45TIAs24 (45%)53Strokes22 (45%)49MiscellaneousNon-Hodgkin lymphoma 13 (5%)60IUGR = intrauterine growth retardation TFT = thyroid function testFSGS = focal segmental glomerulosclerosis TIA = transient ischemic attack1. EBV-positive and negative non-Hodgkin lymphomaPhysical features. Most affected individuals have hyperpigmented macules on the trunk and occasionally on the extremities, neck, and face. Less common ectodermal abnormalities include fine or sparse hair, microdontia or adontia, and corneal opacities. Development. Most individuals with SIOD have normal intellectual and neurologic development until the onset of cerebral ischemic events. A few have developmental delay, and in most of these, the delay can be ascribed to the deleterious consequences of chronic illness. Growth and endocrine findings. Most affected children have prenatal and postnatal disproportionate growth failure. A few have normal intrauterine growth followed by postnatal growth failure. The observed disproportionate growth deficiency is not a result of renal failure. Comparison of the anthropometric measurements of persons with SIOD to persons with non-SIOD chronic kidney disease found that in nearly all parameters, persons with SIOD differed significantly from those with non-SIOD chronic renal disease. The most marked difference is that in non-SIOD chronic kidney disease, the median leg length is significantly more reduced than trunk length, while in persons with SIOD, the reduction in trunk length was significantly more than that for leg length. Therefore, a sitting height/leg-length ratio of less than 0.83 is suggestive of SIOD in persons with chronic kidney disease [Lücke et al 2006a]. The mean age of diagnosis with growth failure was two years (range: age 0-13 years) [Clewing et al 2007b]. Generally, affected individuals have a normal growth hormone axis and no response to growth hormone supplementation. Heights of those who have survived to adulthood are 136-157 cm for men and 98.5-143 cm for women. Nearly half of affected individuals have subclinical hypothyroidism that persists after renal transplantation. The concentration of thyroid stimulating hormone (TSH) is increased and free and total T3 and T4 concentrations are reduced. Skeletal findings. In addition to the prominent vertebral and femoral abnormalities, less frequent skeletal problems include thoracic kyphosis, scoliosis, and osteopenia. Affected individuals do not usually have joint pain until they develop degenerative hip disease. Hematologic findings and infection. T-cell deficiency causes lymphopenia in approximately 80% of affected individuals. The B-cell count is usually normal to slightly elevated. In addition to T-cell deficiency, several individuals with SIOD have had deficiencies of other blood cell lineages. See Table 2 for types and frequency. Because of immunodeficiency, affected individuals have an increased risk for opportunistic infections such as Pneumocystis carinii pneumonia and more than half have recurrent infections with various bacteria, viruses (including Herpes simplex, Herpes zoster, cytomegalovirus), and fungi (oral and/or cutaneous candida) [Boerkoel et al 2000, Boerkoel et al 2002]. Infection is a common cause of death. Renal findings. Nephropathy usually develops before age 12 years and progresses to ESRD within the subsequent one to 11 years. Usually the diagnosis of nephropathy is made concurrent with or within the five years following the diagnosis of growth failure. Focal segmental glomerulosclerosis (FSGS) is the predominant renal pathology in individuals with SIOD.Gastrointestinal findings. A few individuals with SIOD have enteropathy. In most of these individuals, the enteropathy results from infection, e.g., Heliobacter pylori. However, one individual without evidence of infection had gastrointestinal villous atrophy that improved with corticosteroid therapy [Kaitila et al 1998]. Atherosclerosis and hypertension. Half of individuals with SIOD have symptoms suggestive of atherosclerosis. Vascular changes observed on postmortem tissue from three individuals included focal intimal lipid deposition, focal myointimal proliferation, macrophage invasion, foam cells, fibrous transformation, and calcium deposits [Spranger et al 1991, Lücke et al 2004, Clewing et al 2007a]. The pulmonary and systemic hypertension that persisted despite renal transplantation described by Lücke et al [2004] could be explained by myointimal hyperplasia [Clewing et al 2007a]. Also, gene expression studies have identified a significant decrease in the expression of ELN in individuals with SIOD [Morimoto et al, submitted-b]. This gene encodes for elastin protein, which is critical for maintaining the integrity of the arterial wall. Histopathologic analysis of postmortem arterial tissue from three individuals with SIOD showed splitting and fragmentation of elastin fibers [Clewing et al 2007a; Morimoto et al, submitted-b]. Reduction in the elastin protein results in the increased proliferation of smooth muscle cells in arterial walls and leads to intimal hyperplasia [Urban et al 2002]. Central nervous system (CNS) symptoms. Nearly half of affected individuals have severe migraine-like headaches, transient ischemic attacks (TIAs), or strokes [Kilic et al 2005]. Some affected individuals also have heat intolerance and develop CNS symptoms during hot weather [Baradaran-Heravi et al 2012]. Generally, those with transient ischemic attacks or strokes have diffuse, progressive cerebral arteriosclerosis, whereas those with only migraine-like headaches do not. Frequently the cerebral ischemic events are precipitated by hypertension. The cause of the severe migraine-like headaches is unknown. Clinical course and outcome. SIOD varies in severity, ranging from in utero onset of growth retardation with death in the first few years of life to a slowly progressive course with survival into adulthood. Classically, SIOD has been divided into an infantile- or severe early-onset form and a juvenile- or milder later-onset form. SIOD follows a continuum such that affected individuals with early-onset and severe symptoms usually die early in life, whereas those with mild symptoms survive into adulthood if ESRD is treated with renal dialysis and/or renal transplantation. Severity and age of onset of symptoms do not, however, invariably predict survival; a few individuals have survived beyond age 20 years despite having relatively severe early-onset disease [Lou et al 2002, Lücke et al 2004]. In five multiplex families, the phenotype of siblings has been variable: A boy succumbed to a stroke at age 3.7 years after developing ESRD; his sister succumbed to bone marrow failure at age 2.75 years before developing renal failure and without symptoms of cerebral ischemia [Lou et al 2002]. Of two brothers, one had severe disease and the other had relatively mild disease [Lücke et al 2005a]. Of two brothers with homozygous SMARCAL1 mutations, one presented with growth failure at age six years and the other had no symptoms at age seven years [Bökenkamp et al 2005]. Of three siblings reported by Lama et al [1995], one died as a child and two have survived into their fourth and fifth decades. Of three siblings reported by Dekel et al [2008] the elder brother demonstrated severe disease started at age of 3.5 years and two younger non-identical twin brothers had relatively mild disease.Most affected individuals develop other symptoms within one to five years of the diagnosis of growth failure. Those with severe symptoms usually die within four to eight years. The mean age of death is 9.2 years (range: 3-15 years) [Clewing et al 2007b]. Causes of death include stroke (17%), renal failure (15%), infection (23%), pulmonary hypertension and congestive heart failure (15%), bone marrow failure (3%), complications of organ transplantation (9%), gastrointestinal bleeding (6%), Complications of lymphoproliferative disease (9%), and unspecified acute restrictive lung disease (3%). Among those who have survived beyond puberty, none has reproduced yet. Women develop menses, although the menstrual cycle is usually irregular. Men develop secondary sexual characteristics, but histopathologic examination of the testes identified azoospermia [Clewing et al 2007a].
Genotype-Phenotype Correlations GeneReviews | Ongoing correlations of genotype to phenotype have shown that genotype does not predict disease severity or outcome either within or among families [Bökenkamp et al 2005, Lücke et al 2005a, Clewing et al 2007b, Dekel et al 2008, Baradaran-Heravi et al 2012]. The phenotypic heterogeneity and variable expressivity suggest that SIOD is modified by factors such as environment, epigenetics, and oligogenic inheritance. As a group, those individuals with prominent features of SIOD without detectable SMARCAL1 mutations have a lower frequency of hyperpigmented macules, lymphopenia, focal segmental glomerulosclerosis, and cerebral ischemic symptoms and a higher frequency of cognitive impairment [Clewing et al 2007b, Baradaran-Heravi et al 2008].... |
Differential Diagnosis GeneReviews | The differential diagnosis of Schimke immunoosseous dysplasia (SIOD) depends on the presenting features of the individual.... SyndromeImmune Cell DefectOMIM NumberAssociated with nephrotic syndromeConorenal syndrome | 266920Nail-patella syndrome 161200Schimke immunoosseous dysplasiaT cell242900Braegger syndrome B cellAssociated with immune defectsSkeletal dysplasia with combined immune deficiencyT & B cell200900Cartilage-hair hypoplasiaT & B cell250250Short-limbed skeletal dysplasia with humoral immune deficiencyB cellSchimke immunoosseous dysplasiaT cell242900Roifman syndromeB cell300258Kenny-Caffey syndromeT cell & phagocytes127000, 244460Sanjad-Sakati syndromeT cell & phagocytes241410Immunodeficiency-centromeric instability-facial anomalies syndrome B cell242860MacDermot syndromeT cell, B cell, & phagocytesSpondylo-mesomelic-acrodysplasiaT & B cellsRamaan syndromeT & B cellsThe co-occurrence of T-cell deficiency, disproportionate short stature with spondyloepiphyseal dysplasia, and progressive nephropathy is unique to SIOD. Short stature resulting from renal failure can be distinguished from that of SIOD by the disproportion in body measures [Lücke et al 2006a]. Among individuals with chronic renal failure, median leg length was significantly more reduced than sitting height, whereas in individuals with SIOD, the reduction of sitting height was significantly more pronounced than for leg length. SIOD is very likely if this ratio is less than 0.83. However, other forms of chronic kidney disease have to be considered if the ratio is greater than 1.01.Note to clinicians: For a patient-specific ‘simultaneous consult’ related to this disorder, go to , an interactive diagnostic decision support software tool that provides differential diagnoses based on patient findings (registration or institutional access required).
Management GeneReviews | To establish the extent of disease in an individual diagnosed with Schimke immunoosseous dysplasia (SIOD), the following evaluations are recommended:... |
Molecular genetics GeneReviews | Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.... Gene SymbolChromosomal LocusProtein NameLocus SpecificHGMDSMARCAL12q35 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1Resource of Asian Primary Immunodeficiency Diseases (RAPID)