ZebraFish Interaction SearcH DataBase
The ZebraFish Interaction SearcH DataBase(ZFISHDB) retrieves Danio rerio gene interactions from interactions between orthologous genes.
These interactions are based on the 'cluster of orthologous genes'-mode of the STRING database [von Mering et al., Nucleic Acids Res, 35:D358-62, 2007] which integrates and scores information derived from high- throughput experiments, genomic context, and previous knowledge like text-mining of abstracts.
Enter a list of gene symbols (separated by tab, comma, semicolon or newline). ZFISHDB will return interactions between genes with a STRING combined score above 0.8. In addition, ZFISHDB offers a gene ontology filter to reduce the size of large data sets.
These interactions are based on the 'cluster of orthologous genes'-mode of the STRING database [von Mering et al., Nucleic Acids Res, 35:D358-62, 2007] which integrates and scores information derived from high- throughput experiments, genomic context, and previous knowledge like text-mining of abstracts.
Enter a list of gene symbols (separated by tab, comma, semicolon or newline). ZFISHDB will return interactions between genes with a STRING combined score above 0.8. In addition, ZFISHDB offers a gene ontology filter to reduce the size of large data sets.
