BioProfiling.de: analytical web portal for high-throughput cell biology
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W323-7. doi: 10.1093/nar/gkr372.
Gene List submission page
BioProfiling.de provides you most comprehensive analytical toolkit for interpretation of a gene list. In one submission your gene list will be analyzed by several recently developed web tools . The gene list will be profiled in respect to almost all available information regarding gene function, interactions and pathway relationships.
*It is assumed that your gene list was selected based on genome-wide analyses (i.e. as a reference set all genes from the corresponding genome are used). If this is not generally true then you must use another submission page where you can upload also the reference gene set.
Gene and Protein identifiersYou can submit several types of gene or protein identifiers. They will be automatically processed. For example, for the human genome BioProfiling.de supports Entrez Gene Id, Gene Symbol, UniProt/Swiss-Prot, HUGO Gene Symbol, UniGene, Ensembl, RefSeq Protein ID, RefSeq Transcript ID, and most Affymetrix probe codes.
File formatPlease, check that you are submitting text file with one gene Id per line. Additionally, the gene list with less then 10 identifiers in most cases makes little sense for statistical analysis.
ExamplesPlease visit our example Gallery to get quick guide of results one can get using our tools.
Scientific GalleryPlease visit our Scientific Gallery. Here we present recently published most interesting papers which used our tools for interpretations of experimental data to address important biological issues.
Online TutorialPlease visit our online tutorial pageTutorials.
How to produce high-quality imagesPlease note that you can produce high-quality graphical figures of the network models produced by spider tools (KEGG spider, PPI spider, R spider, Ccancer spider). Please, read instructions here.
Technical DetailsHere you can find details for the source data used by BioProfiling.de tools.
More about citing BioProfiling.de
Feel free to use our tools at bioprofiling.de:
- MIRUMIR: test your microRNA as biomarker of cancer survival
- PPISURV: test your gene as biomarker of cancer survival
- GENESURV test whether your gene list is statistically enriched with genes which affect survival in particular clinical conditions
- DRUGSURV explore whether your gene has potential as a drug target for repositioning of FDA approved drugs