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Arabidopsis thaliana project



Element Report

Name: AT1G08130.1Version: 10
Element type:transcript
Description:DNA ligase 1
Comment:Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.
Contig:chr1_pseudomolecule_TAIR9

Gene features
Size (bp):5245
Spliced size (bp):2715
Start:2547946
Stop:2542702
Subelements:
TypeStartStopSize
5'UTR1131131
exon1917917
exon10381154117
exon12831384102
exon14611577117
exon18082038231
exon2133222795
exon2306239388
exon28522983132
exon30903202113
exon37863887102
exon3966402762
exon4107417872
exon4279435274
exon4431448757
exon4593467078
exon4773485078
exon49665245280
3'UTR50355245211
Related elements:Group List
Evidences:Evidence List

References
Confidence:TAIR ath release 10.0
Publications:PubMed
External links:TIGR TAIR
References:GO database
GO database
GO database
GO database
GO database
GO database
GO database
GO database

Gene family information
Show orthologous gene family: Gene family

Sequence report for AT1G08130.1
View sequence: CDS
spliced
unspliced
Protein

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Protein domain informations from SIMAP
Simap homologs in:-Viridiplantae
-Fungi
-Mammalia
Simap features:List protein features and domains in this gene

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