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Subnetwork analysis
Attach a
text file
with a gene/protein lists
(one gene ID per line)
help
Please, do not attach Excel files
Gene list upload
Organism:
Homo sapiens
Mus musculus
Rattus norvegicus
C. elegans
Drosophila melanogaster
S. cerevisiae
Arabidopsis thalaniae
E. coli
Campylobacter jejuni
# random networks:
help
20
100
200
KEGG spider is a web-based tool for interpretation of experimentally derived gene lists in order to gain an understanding of metabolism variations at a genomic level. KEGG spider implements a "pathway-free" framework, which overcomes a major bottleneck of exisiting enrichment analyses: it provides global models uniting genes from different metabolic pathways. By analyzing a number of experimentally derived gene lists, we demonstrate that KEGG spider provides deeper insights into metabolism variations in comparison to existing methods.
Reference:
Antonov A.V., Dietmann S., Mewes H.W.
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.
Genome Biology 2008, 9:R179.
Feel free to use our other web-based tools for the interpretation of experimental data.
Currently you can access the following tools:
KEGG spider
interpretation of genomics data in the context of the global gene metabolic network.
PPI spider
interpretation of genomics data in the context of the global protein interaction network.
PLIPS
an Automatically Collected Database of Protein Lists Reported by Proteomics Studies
ProfCom
profiling a complex functionality of gene groups
GeneSet2MiRNA
searching for the signiture of MiRNA regulatory activity in a gene list
TICL
network-based Interpretation of Compound Lists inferred by high-throughput metabolomics
DICS
dense modules from protein-protein interaction networks.