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EST3

 

 

Training of a classifier

 

EST3

METHOD
HELP

on-line software
   Classification

    Training

developers

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  Plant-Pathogen genome information  
 
 
Plant NCBI TaxId 
Fungi NCBI TaxId 
Maximum number of ESTs 
Threshold size of ESTs 
 
  EST DATA  
Plant   
Fungi   
  EST data should be in FASTA format  

 



Usage: Specify NCBI taxonomy id for each organism specific sequence set.
This enables the server to link your data to the GenBank taxserver.
Specify Maximum number of sequences per genome for analysis.
Maximum 500 ESTs are allowed by the server due to CPU limitations.
Specify a Threshold size for each sequence.
Thus shorter reads, which are often sequence contaminations, are excluded
from training of the classifier.

You can also train classifier for any other pair of genomes, not just plant-fungi!

 

 

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