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(chrI - chrXVI,chrMito,2-micron)

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  VIII  IX  X  XI  XII  XIII
  XIV  XV  XVI  Mito
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MPact protein interaction

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WUBLAST DNA/Protein

About CYGD


MIPS Fungal Genomes
mips home MIPS-FUNGI-ADM      FTP
SNF12 Component of SWI/SNF global transcription activator complex 
Entry:YNR023w
Alias:N3224; SWP73; (NET1)
Classification:known protein | 5422 Entries | Evi | PUBMED
Feature Type:CDS
Features
   Blast-Simap    DNA VIEW    PROTEIN VIEW
Similarity:
Paralogs (28.4 %) ;  |  Homologs in   Hemiascomycota (87.3 %);  Basidiomycota (20.3 %);  Fungi (87.3 %);  Eukaryota (87.3 %);  Plants (23.2 %);  Mammalia (20.5 %);  Human (20.2 %);  Bacteria (16 %);  All except yeast (87.3 %)
  • similarity to Rsc6p, A.gossypii AgTHR4gns
Functional Classification:
  • CELL CYCLE AND DNA PROCESSING
    ..DNA processing
    ....DNA restriction or modification
    ......DNA conformation modification (e.g. chromatin) | 187 Entries | Evi | PUBMED
InterPro:
Localization:  SNF12 localization details
  • nucleus
Remarks:
  • involved in mitochondrial pyruvate transport (see X62430)
  • contains a potential mitochondrial targeting sequence (25aa on the extreme N-terminus)
Phenotypes:  Disruption: SNF12 details
  • viable
___
  • snf12 mutant shows a pet phenotype (see X62430)
  • mutants are ts and display phenotypes similar to swi and snf mutants
___
  • Conditional phenotypes
    ..Heat-sensitivity (ts) | 313 Entries
  • Auxotrophies, carbon and nitrogen utilization defects
    ..Carbon utilization
    ....Respiratory deficiency | 173 Entries
Suppression:
  • complements a petite-type mutation
Click for larger Map
Physical Features
Coordinates:670420 - 672120 (W)
Length:1701 nt
Contig:chrXIV
Exon Coordinates:670420 - 672120
GC Content:38.7 %
Protein Length:566 aa
Isoelectric Point:5.47
Molecular Weight:63871 Da
Retrieve Sequence: DNA /Protein
Literature | References
CYGD curated Lit.:PubMed
PubMed:Search abstracts
PubMed Central:Search full-text articles
Sequence References:
EMBL: Z71638
EMBL: X62430
PIR: S19063
UniProtKB: P53628
NCBI: NP_014420
Additional Links:
CYGD Pathways:
  • RNA Polymerase II Transcription Initiation Machinery
    • LinkOut:
  • SGD - Saccharomyces Genome Database
  • YGOB - Yeast Gene Order Browser
  • yMGV - yeast Microarray Global Viewer
    • To submit new information about this entry, please write to

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