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Chromosome
(chrI - chrXVI,chrMito,2-micron)

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  I  II  III  IV  V  VI  VII
  VIII  IX  X  XI  XII  XIII
  XIV  XV  XVI  Mito
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MPact protein interaction

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WUBLAST DNA/Protein

About CYGD


MIPS Fungal Genomes
mips home MIPS-FUNGI-ADM      FTP
SYC1 Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3` end formation of both polyadenylated and non-polyadenylated RNAs 
Entry:YOR179c
Alias:O4708
Classification:known protein | 5422 Entries | Evi | PUBMED
Feature Type:CDS
Features
   Blast-Simap    DNA VIEW    PROTEIN VIEW
Similarity:
Paralogs (15.5 %) ;  |  Homologs in   Hemiascomycota (81.4 %);  Basidiomycota (12 %);  Fungi (81.4 %);  Eukaryota (81.4 %);  Plants (11.9 %);  Mammalia (9.8 %);  Human (12.3 %);  Bacteria (15 %);  All except yeast (81.4 %)
  • similarity to BRR5 protein
Functional Classification:
  • TRANSCRIPTION
    ..RNA processing
    ....mRNA processing (splicing, 5'-, 3'-end processing) | 186 Entries | Evi
  • TRANSCRIPTION
    ..RNA synthesis
    ....mRNA synthesis
    ......general transcription activities
    ........transcription termination | 14 Entries | Evi | PUBMED
Localization:  SYC1 localization details
  • nucleus
Remarks:
  • Similar to Ysh1 C-terminal | Evi
    Phenotypes:  Disruption: SYC1 details
    • viable
    Click for larger Map
    Physical Features
    Coordinates:672412 - 671846 (C)
    Length:567 nt
    Contig:chrXV
    Exon Coordinates:672412 - 671846
    GC Content:39.3 %
    Protein Length:188 aa
    Isoelectric Point:5.44
    Molecular Weight:20865.9 Da
    Retrieve Sequence: DNA /Protein
    Literature | References
    CYGD curated Lit.:PubMed
    PubMed:Search abstracts
    PubMed Central:Search full-text articles
    Sequence References:
    EMBL: Z75087
    PIR: S67071
    UniProtKB: Q08553
    NCBI: NP_014822
    Additional Links:
    LinkOut:
  • SGD - Saccharomyces Genome Database
  • YGOB - Yeast Gene Order Browser
  • yMGV - yeast Microarray Global Viewer
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