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Chromosome
(chrI - chrXVI,chrMito,2-micron)

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  I  II  III  IV  V  VI  VII
  VIII  IX  X  XI  XII  XIII
  XIV  XV  XVI  Mito
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MPact protein interaction

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About CYGD


MIPS Fungal Genomes

mips home MIPS-FUNGI-ADM      FTP
TPM1 Tropomyosin 1 
Entry:YNL079c
Alias:N2332
Classification:known protein | 5422 Entries | Evi | PUBMED
Feature Type:CDS
Features
   Blast-Simap    DNA VIEW    PROTEIN VIEW

Similarity:
Paralogs (52.8 %) ;  |  Homologs in   Hemiascomycota (98.5 %);  Basidiomycota (34.7 %);  Fungi (98.5 %);  Eukaryota (98.5 %);  Plants (13.1 %);  Mammalia (25.4 %);  Human (25.3 %);  Bacteria (25 %);  All except yeast (98.5 %)

  • strong similarity to Tpm2p and S.pombe cdc8
  • 20% identical to vertebrate tropomyosins
Functional Classification:
  • CELLULAR TRANSPORT, TRANSPORT FACILITIES AND TRANSPORT ROUTES
    ..transport routes
    ....vacuolar/lysosomal transport | 154 Entries | Evi | PUBMED
  • CELLULAR TRANSPORT, TRANSPORT FACILITIES AND TRANSPORT ROUTES
    ..transport routes
    ....cellular export and secretion
    ......vesicular cellular export
    ........exocytosis | 33 Entries | Evi | PUBMED
  • CELL TYPE DIFFERENTIATION
    ..fungal/microorganismic cell type differentiation
    ....fungal and other eukaryotic cell type differentiation
    ......budding, cell polarity and filament formation | 313 Entries | Evi | PUBMED
  • INTERACTION WITH THE ENVIRONMENT
    ..cellular sensing and response to external stimulus
    ....chemoperception and response
    ......pheromone response, mating-type determination, sex-specific proteins | 189 Entries | Evi
  • BIOGENESIS OF CELLULAR COMPONENTS
    ..cytoskeleton/structural proteins
    ....actin cytoskeleton | 96 Entries | Evi | PUBMED
  • PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic)
    ..protein binding | 392 Entries | Evi | PUBMED
  • CELLULAR TRANSPORT, TRANSPORT FACILITIES AND TRANSPORT ROUTES
    ..transported compounds (substrates)
    ....RNA transport | 86 Entries | Evi | PUBMED
Localization:  TPM1 localization details
  • cytoplasm
  • cytoskeleton
  • cytoskeleton
    ..actin cytoskeleton
  • nucleus
Remarks:
  • abundant enough to bind all F-actin in the cell
  • actin cables are required for cell cycle linked mitochondrial movements leading to inheritance | PUBMED
  • coiled-coil protein
Phenotypes:  Disruption: TPM1 details
  • viable
___
  • tpm1 mutant loses actin cables | PUBMED
  • tpm mutant has reduced growth rate | PUBMED
  • null mutants are heterogeneous in size
  • null mutants have defects in polarity including delocalized chitin deposition
  • null mutants mate poorly due to defects in formation of mating projection and cell fusion
  • mutants accumulate secretory vesicles
  • mutant phenotype is similar to myo2 phenotype
  • mutant has delocalized actin patches, but can still carry out endocytosis
  • mutant shows wild type movement of cortical actin patches
  • CDC39, STE12, TEC1, WHI3, NAB1, DBR1, CDC55, SRV2 TPM1, SPA2, BIN1, DFG5, DFG9, DFG10, BUD8 and DFG16 mutations block filamentous growth
  • tpm1, spa2, bin1, srv2, dfg5, dfg9 and dfg10 are defective in cell polarity switch but still invade agar
  • tpm1 disruption mutant shows abnormal mitochondrial distribution and morphology | PUBMED
  • tpm1 disruption do not affect mitochondrial motor acticity in vitro | PUBMED
___
  • Mating and sporulation defects
    ..Mating efficiency | 31 Entries
  • Cell morphology and organelle mutants
    ..Budding mutants
    ....Bud localization | 35 Entries
  • Cell morphology and organelle mutants
    ..Budding mutants
    ....Pseudohyphae formation | 31 Entries
  • Cell morphology and organelle mutants
    ..Cytoskeleton mutants
    ....Actin cytoskeleton mutants | 48 Entries
  • Cell morphology and organelle mutants
    ..Secretory mutants | 61 Entries
  • Cell morphology and organelle mutants
    ..Mitochondrial mutants | 37 Entries
  • Cell morphology and organelle mutants
    ..other cell morphology mutants | 57 Entries
Overexpression:
  • rescues mdm20 null mutation
  • overexpression restores actin cables to act1-2 mutant | PUBMED
Click for larger Map
Physical Features
Coordinates:479166 - 478567 (C)
Length:600 nt
Contig:chrXIV
Exon Coordinates:479166 - 478567
GC Content:44 %
Protein Length:199 aa
Isoelectric Point:4.58
Molecular Weight:23540.8 Da
Retrieve Sequence: DNA /Protein
Literature | References
CYGD curated Lit.:PubMed
PubMed:Search abstracts
PubMed Central:Search full-text articles
Sequence References:
EMBL: Z71355
EMBL: X86470
EMBL: M25501
PIR: A32183
UniProtKB: P17536
UniProtKB: Q45TY1
NCBI: NP_014320
Additional Links:
LinkOut:
  • SGD - Saccharomyces Genome Database
  • YGOB - Yeast Gene Order Browser
  • yMGV - yeast Microarray Global Viewer

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