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(chrI - chrXVI,chrMito,2-micron)

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About CYGD


MIPS Fungal Genomes

mips home MIPS-FUNGI-ADM      FTP
SDC25 Strong similarity to Ras guanine nucleotide exchange factor (GEF), pseudogene in S288C 
Entry:YLL016w
Alias:L1305; L1309; SCD25; YLL017w
Feature Type:pseudogene
Features
Similarity:
Paralogs (0 %) ;  |  Homologs in   Hemiascomycota (0 %);  Basidiomycota (0 %);  Fungi (0 %);  Eukaryota (0 %);  Plants (0 %);  Mammalia (0 %);  Human (0 %);  Bacteria (0 %);  All except yeast (0 %)

  • similarity to S.kluyveri CDC25, Cdc25p, S.pombe ste6 and mammalian cdc25 proteins
  • similarity to other guanine-nucleotide releasing factors of the CDC25 family
Functional Classification:
  • INTERACTION WITH THE ENVIRONMENT
    ..cellular sensing and response to external stimulus
    ....perception of nutrients and nutritional adaptation | 33 Entries | Evi
  • METABOLISM
    ..C-compound and carbohydrate metabolism
    ....regulation of C-compound and carbohydrate metabolism | 127 Entries | Evi
  • CELL CYCLE AND DNA PROCESSING
    ..cell cycle
    ....mitotic cell cycle and cell cycle control | 447 Entries | Evi
  • REGULATION OF METABOLISM AND PROTEIN FUNCTION
    ..regulation of protein activity
    ....regulator of G-protein signalling | 15 Entries | Evi
InterPro:
Localization:  SDC25 localization details
  • plasma membrane
Remarks:
  • L1305 and L1309 can be joined to one gene
  • n the S288C strain, there is a stop codon between YLL017W and YLL016W, the ORFs that comprise SDC25, while in other strains the stop codon is absent and the ORFs are merged into one longer ORF
  • contains a copy of the SH3 domain | PUBMED
  • contains a cyclin destruction box and is unstable | PUBMED
  • C-terminal part is 47% identical to Cdc25p, similartity of N-terminus is lower | PUBMED
  • C-terminal part can enhance GDP/GTP exchange on Ras2p | PUBMED
Phenotypes:  Disruption: SDC25 details
  • viable
___
Overexpression:
  • overexpression replaces Cdc25p functionally | PUBMED
Suppression:
  • C-terminal part suppresses cdc25 | PUBMED
  • complete SDC25 gene does not suppress cdc25 | PUBMED
Click for larger Map
Physical Features
Coordinates:112846 - 115992 (W)
Length:3147 nt
Contig:chrXII
Retrieve Sequence: DNA
Literature | References
CYGD curated Lit.:PubMed
PubMed:Search abstracts
PubMed Central:Search full-text articles
Sequence References:
EMBL: Z73121
EMBL: M26647
EMBL: X97560
EMBL: X91488
PIR: S64758
PIR: S14177
Additional Links:
LinkOut:
  • SGD - Saccharomyces Genome Database
  • YGOB - Yeast Gene Order Browser
  • yMGV - yeast Microarray Global Viewer

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