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MPact protein interaction

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WUBLAST DNA/Protein

About CYGD


MIPS Fungal Genomes

mips home MIPS-FUNGI-ADM      FTP
YRB1 Ran-specific GTPase-activating protein 
Entry:YDR002w
Alias:CST20; D2960; HTN1; SFO1; YD8119.08; (RBP1)
Classification:known protein | 5422 Entries
Feature Type:CDS
Features
   Blast-Simap    DNA VIEW    PROTEIN VIEW

Similarity:
Paralogs (17.1 %) ;  |  Homologs in   Hemiascomycota (98.5 %);  Basidiomycota (48.8 %);  Fungi (98.5 %);  Eukaryota (98.5 %);  Plants (36.3 %);  Mammalia (42.3 %);  Human (42.3 %);  Bacteria (17.4 %);  All except yeast (98.5 %)

  • strong similarity to human GTP binding protein RanBP1
  • similarity to Yrb2p
Functional Classification:
  • CELLULAR TRANSPORT, TRANSPORT FACILITIES AND TRANSPORT ROUTES
    ..transport routes
    ....nuclear transport | 85 Entries | Evi | PUBMED
  • CELL CYCLE AND DNA PROCESSING
    ..cell cycle
    ....mitotic cell cycle and cell cycle control
    ......mitotic cell cycle
    ........G1/S transition of mitotic cell cycle | 37 Entries | Evi | PUBMED
  • PROTEIN FATE (folding, modification, destination)
    ..protein/peptide degradation
    ....cytoplasmic and nuclear protein degradation
    ......proteasomal degradation (ubiquitin/proteasomal pathway) | 128 Entries | Evi | PUBMED
  • PROTEIN FATE (folding, modification, destination)
    ..protein targeting, sorting and translocation | 280 Entries | Evi | PUBMED
  • PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic)
    ..protein binding | 392 Entries | Evi | PUBMED
  • CELLULAR TRANSPORT, TRANSPORT FACILITIES AND TRANSPORT ROUTES
    ..transported compounds (substrates)
    ....RNA transport | 86 Entries | Evi | PUBMED
InterPro:
Localization:  YRB1 localization details
  • cytoplasm
Remarks:
  • may interact with GSP1/GSP2 and PRP20 in an intracellular signalling pathway which may control the progression through the cell cycle by regulating the transport of protein and nucleic acids across the nuclear membrane
  • may potentiate the action of RANGAP1 (RNA1) on GSP1, thus playing the role of a negative regulator of the GSP1
  • mammalian homolog binds to Ran and stimulates activity of RanGAP
  • contains a Ran-binding protein (rbp1) motif
Phenotypes:  Disruption: YRB1 details
  • lethal
___
  • ts mutants at the non-permissive temperature are defective in nuclear protein transport and RNA export
  • null mutant spores fail to germinate
___
  • Conditional phenotypes
    ..Heat-sensitivity (ts) | 313 Entries
  • Mating and sporulation defects
    ..Sporulation efficiency | 112 Entries
Overexpression:
  • overexpression causes sensitivity to hydroxyurea and UV radiation, DNA lesions, and lethality in rad9 mutants
  • overexpression is nearly lethal in cells defective for the Mad2p checkpoint
  • overexpression affect chromosome stability | PUBMED
Click for larger Map
Physical Features
Coordinates:453042 - 453647 (W)
Length:606 nt
Contig:chrIV
Exon Coordinates:453042 - 453647
GC Content:41.1 %
Protein Length:201 aa
Isoelectric Point:5.85
Molecular Weight:22952.9 Da
Retrieve Sequence: DNA /Protein
Literature | References
CYGD curated Lit.:PubMed
PubMed:Search abstracts
PubMed Central:Search full-text articles
Sequence References:
EMBL: Z33503
EMBL: Z48008
PIR: S50219
UniProtKB: P41920
NCBI: NP_010285
Additional Links:
CYGD Pathways:
  • Genetic and biochemical interaction between nucleoporins and transport factors
  • LinkOut:
  • SGD - Saccharomyces Genome Database
  • YGOB - Yeast Gene Order Browser
  • yMGV - yeast Microarray Global Viewer

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