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MIPS Fungal Genomes

    

Functional Classification of Proteins

Proteins are functionally classified using the MIPS FunCat. For a first analysis the assignment is done by the PEDANT system using homology to already manually annotated proteins. Only entries with a quality value ((identities * length) / hit length) >= 25 % are transfered in the GenRE database (Wilson CA et al. (2000)).

Search for Functional Distribution of Gene Lists

In case you are interested in the functional distribution of a gene set, e.g. a set of genes with up-or down-regulated expression you can retrieve the distribution using our FunCatDB. Simply go there, select 'Neurospora crassa' and paste your gene list. The result will be presented in html as well as a tab delimited table for download.

Functional CategoryProteins
01  METABOLISM1740
02  ENERGY375
10  CELL CYCLE AND DNA PROCESSING622
11  TRANSCRIPTION725
12  PROTEIN SYNTHESIS362
14  PROTEIN FATE (folding, modification, destination)862
16  PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic)1375
18  REGULATION OF METABOLISM AND PROTEIN FUNCTION216
20  CELLULAR TRANSPORT, TRANSPORT FACILITIES AND TRANSPORT ROUTES970
30  CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM286
32  CELL RESCUE, DEFENSE AND VIRULENCE594
34  INTERACTION WITH THE ENVIRONMENT473
36  SYSTEMIC INTERACTION WITH THE ENVIRONMENT7
38  TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS13
40  CELL FATE 241
41  DEVELOPMENT (Systemic)45
42  BIOGENESIS OF CELLULAR COMPONENTS523
43  CELL TYPE DIFFERENTIATION280
47  ORGAN DIFFERENTIATION2
99  UNCLASSIFIED PROTEINS5853
X  Functionally Classified Proteins4213
-  Functionally Unclassified Proteins5853

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MIPS Databases and associated information are protected by copyright. This server and its associated data and services are for academic, non-commercial use only. The GSF has no liability for the use of results, data or information which have been provided through this server. Neither the use for commercial purposes, nor the redistribution of MIPS database files to third parties nor the distribution of parts of files or derivative products to any third parties is permitted. Commercial users may contact the distributor Biomax Informatics AG.