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About FGDB


MIPS Fungal Genomes

    
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FWF Der Wissenschaftsfonds.

The FGDB interface is decommissioned since June 2014.
To access the genome data please visit our Fungal Resources entry page
and follow the links to the Pedant and GBrowse resources in the respective project pages.


Welcome to the MIPS Fusarium graminearum Genome Database

The MIPS Fusarium graminearum Genome Database aims to present information on the molecular structure and functional network of the entirely sequenced, filamentous fungus Fusarium graminearum (Anamorph of Gibberella zeae). This interface is based on the assembly 3 sequence of the Whitehead Center for Genome Research. Please note the Whitehead Institute Disclaimer . The goal is to provide a comprehensive genome database in the Genome Research Environment in parallel with other fungal genomes to enable in depth fungal comparative analysis.

This project started as part of the GEN-AU Project Virulence mechanisms of the plant pathogenic fungus Fusarium graminearum and resistance mechanisms in host plants coordinated by Dr. Gerhard Adam (BOKU, Vienna) and funded by the Austrian Federal Ministry for Education, Science and Culture, which has established the national genome programme GEN-AU (GENome Research in AUstria: http://www.gen-au.at/). Since 2009 funded by the Austrian FWF (SFB37).

More on the outline of the Project


 

There is an onogoing effort to process all gene calls manually and thus, the number of genes is a moving target. Any evidence on wrong or correct gene calls is welcome. Please provide your data for manual detailed curation of the FGDB content. Thanks!

Citation: Wong P, Walter M, Lee W, Mannhaupt G, Münsterkötter M, Mewes HW, Adam G, Güldener U (2010). FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum. Nucleic Acids Research 2010; doi: 10.1093/nar/gkq1016

News:

  • 2011-03-27: New gene model set released: version 3.2. Re-visit of annotation resulted in a set of 13826 CDS. Details of this new set compared to the Broad annotation are on ftp.

  • 2010-07-27: New gene model set released: version 3.1. Genome wide integration of gene predictions, EST data and comparative gene calling resulted in a set of 13719 CDS. New calls are named FGSG_15xxx and beyond.

  • 2010-06-02: PLEXdb Gene OscilloScope link integrated to explore the detailed expression data of all public experiments.

  • 2010-01-15: GeneChip expression data integrated (Link below the GBrowse snapshot). Genome wide revision of gene calls ongoing, release of a revised version upcoming.

  • 2008-02-10: FG3 assembly and calls imported. Conflicts with mapped FG1 calls corrected. Where necessary, new calls (FGSG_15xxx) introduced.

© 2003 GSF - Forschungszentrum für Umwelt und Gesundheit, GmbH Ingolstädter Landstraße 1, D-85764 Neuherberg

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Disclaimer:
MIPS Databases and associated information are protected by copyright. This server and its associated data and services are for academic, non-commercial use only. The GSF has no liability for the use of results, data or information which have been provided through this server. Neither the use for commercial purposes, nor the redistribution of MIPS database files to third parties nor the distribution of parts of files or derivative products to any third parties is permitted. Commercial users may contact the distributor Biomax Informatics AG.